RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 DUX4L4P0CJ87 422 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 DUX4L5P0CJ88 424 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 DUX4L6P0CJ89 424 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 DUX4L7P0CJ90 424 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 CSNK2A2P19784 350 aaPredicted RBP8.78□□□□□ -1
HDAC3-205ENST00000469550 ITPKBP27987 946 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 PYCR1P32322 319 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 ACVR1BP36896 505 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 RAD52P43351 418 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 DLX5P56178 289 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 OR12D2P58182 307 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 STXBP1P61764 594 aaKnown RBP8.78□□□□□ -1
HDAC3-205ENST00000469550 FLI1Q01543 452 aaPredicted RBP8.78□□□□□ -1
HDAC3-205ENST00000469550 DPTQ07507 201 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 IL10RAQ13651 578 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 MRM1Q6IN84 353 aaKnown RBP8.78□□□□□ -1
HDAC3-205ENST00000469550 FAM199XQ6PEV8 388 aaPredicted RBP8.78□□□□□ -1
HDAC3-205ENST00000469550 IGF2-ASQ6U949 168 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 TMPRSS11FQ6ZWK6 438 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 TMUB2Q71RG4 321 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 LINGO2Q7L985 606 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 C11orf96Q7Z7L8 435 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 PM20D2Q8IYS1 436 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 SLC43A2Q8N370 569 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 KCT2Q8NC54 265 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 NUP43Q8NFH3 380 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 OR13H1Q8NG92 308 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 OR5M9Q8NGP3 310 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 ZNF671Q8TAW3 534 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 FCAMRQ8WWV6 532 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 ASB12Q8WXK4 309 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 SMPDL3BQ92485 455 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 TFGQ92734 400 aaPredicted RBP8.78□□□□□ -1
HDAC3-205ENST00000469550 PNPLA2Q96AD5 504 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 CNRIP1Q96F85 164 aaPredicted RBP8.78□□□□□ -1
HDAC3-205ENST00000469550 PRAP1Q96NZ9 151 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 PRSS27Q9BQR3 290 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 MENTQ9BUN1 341 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 TRPM6Q9BX84 2022 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 ACTRT3Q9BYD9 372 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 MED20Q9H944 212 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 CA10Q9NS85 328 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 MED11Q9P086 117 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 DUX4Q9UBX2 424 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 CES1P1Q9UKY3 287 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 SLC7A7Q9UM01 511 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 CLEC4AQ9UMR7 237 aa8.78□□□□□ -1
HDAC3-205ENST00000469550 LY6G6EA0A0G2JKS1 128 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 TRAPPC13A5PLN9 417 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 SLC31A1O15431 190 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 SELENOFO60613 162 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 SDC3O75056 442 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 THBS1P07996 1170 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 PRG2P13727 222 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 POU3F2P20265 443 aaPredicted RBP8.77□□□□□ -1
HDAC3-205ENST00000469550 MPIP34949 423 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 KIAA1024LP59773 190 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 B2MP61769 119 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 ACTA2P62736 377 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 ACTG2P63267 376 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 CSNK1G2P78368 415 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 GK2Q14410 553 aaPredicted RBP8.77□□□□□ -1
HDAC3-205ENST00000469550 ZNF169Q14929 603 aaPredicted RBP8.77□□□□□ -1
HDAC3-205ENST00000469550 CDK5R1Q15078 307 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 ZIC1Q15915 447 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 POM121L1PQ3SYA9 428 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 EIPR1Q53HC9 387 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 TMEM255AQ5JRV8 349 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 SHEQ5VZ18 495 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 SLC25A25Q6KCM7 469 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 RPL22L1Q6P5R6 122 aaKnown RBP8.77□□□□□ -1
HDAC3-205ENST00000469550 LRFN4Q6PJG9 635 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 APOOLQ6UXV4 268 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 ZNF793Q6ZN11 406 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 ESPNLQ6ZVH7 1005 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 MCATQ8IVS2 390 aaKnown RBP8.77□□□□□ -1
HDAC3-205ENST00000469550 CCDC116Q8IYX3 515 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 SLC22A18ASQ8N1D0 253 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 C2orf73Q8N5S3 287 aaPredicted RBP8.77□□□□□ -1
HDAC3-205ENST00000469550 CLRN3Q8NCR9 226 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 OR5J2Q8NH18 312 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 OR52I2Q8NH67 350 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 OR5K2Q8NHB8 316 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 LGALS14Q8TCE9 139 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 MARC2Q969Z3 335 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 SEC22CQ9BRL7 303 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 DUSP23Q9BVJ7 150 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 PLAGL1Q9UM63 463 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 ZNF443Q9Y2A4 671 aaPredicted RBP8.77□□□□□ -1
HDAC3-205ENST00000469550 NTNG1Q9Y2I2 539 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 U3KQA8 63 aa8.77□□□□□ -1
HDAC3-205ENST00000469550 PTPRQQ9UMZ3 2332 aa8.77□□□□□ -1.01
HDAC3-205ENST00000469550 GIMAP1-GIMAP5A0A087WTJ2 511 aa8.77□□□□□ -1.01
HDAC3-205ENST00000469550 A0A0B4J203 849 aa8.77□□□□□ -1.01
HDAC3-205ENST00000469550 A0A1W2PPV9 198 aa8.77□□□□□ -1.01
HDAC3-205ENST00000469550 A0A1W2PR48 441 aa8.77□□□□□ -1.01
HDAC3-205ENST00000469550 ANXA2P2A6NMY6 339 aa8.77□□□□□ -1.01
HDAC3-205ENST00000469550 RIIAD1A6NNX1 92 aa8.77□□□□□ -1.01
HDAC3-205ENST00000469550 ZNF879B4DU55 563 aa8.77□□□□□ -1.01
HDAC3-205ENST00000469550 DNASE2O00115 360 aaPredicted RBP8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms