RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 HSD17B12Q53GQ0 312 aa18.24■□□□□ 0.51
VPS53-201ENST00000291074 KRT74Q7RTS7 529 aa18.24■□□□□ 0.51
VPS53-201ENST00000291074 RGP1Q92546 391 aaPredicted RBP18.24■□□□□ 0.51
VPS53-201ENST00000291074 RNF170Q96K19 258 aa18.24■□□□□ 0.51
VPS53-201ENST00000291074 MARVELD1Q9BSK0 173 aa18.24■□□□□ 0.51
VPS53-201ENST00000291074 ABCG5Q9H222 651 aa18.24■□□□□ 0.51
VPS53-201ENST00000291074 SYNDIG1Q9H7V2 258 aa18.24■□□□□ 0.51
VPS53-201ENST00000291074 GPANK1O95872 356 aa18.24■□□□□ 0.51
VPS53-201ENST00000291074 IL10RAQ13651 578 aa18.24■□□□□ 0.51
VPS53-201ENST00000291074 ARHGAP40Q5TG30 622 aa18.24■□□□□ 0.51
VPS53-201ENST00000291074 OTPQ5XKR4 325 aa18.24■□□□□ 0.51
VPS53-201ENST00000291074 LIPHQ8WWY8 451 aa18.24■□□□□ 0.51
VPS53-201ENST00000291074 SNX18Q96RF0 628 aa18.24■□□□□ 0.51
VPS53-201ENST00000291074 CCNL2Q96S94 520 aaPredicted RBP18.24■□□□□ 0.51
VPS53-201ENST00000291074 TSPAN10Q9H1Z9 355 aaPredicted RBP18.24■□□□□ 0.51
VPS53-201ENST00000291074 CHRDQ9H2X0 955 aa18.24■□□□□ 0.51
VPS53-201ENST00000291074 ZNF304Q9HCX3 659 aa18.24■□□□□ 0.51
VPS53-201ENST00000291074 TRIOBPQ9H2D6 2365 aa18.23■□□□□ 0.51
VPS53-201ENST00000291074 A6NL46 340 aa18.23■□□□□ 0.51
VPS53-201ENST00000291074 NUDT14O95848 222 aa18.23■□□□□ 0.51
VPS53-201ENST00000291074 CD3GP09693 182 aa18.23■□□□□ 0.51
VPS53-201ENST00000291074 MTFR2Q6P444 385 aa18.23■□□□□ 0.51
VPS53-201ENST00000291074 LANCL3Q6ZV70 420 aa18.23■□□□□ 0.51
VPS53-201ENST00000291074 IZUMO1Q8IYV9 350 aa18.23■□□□□ 0.51
VPS53-201ENST00000291074 SLC25A45Q8N413 288 aa18.23■□□□□ 0.51
VPS53-201ENST00000291074 CEP76Q8TAP6 659 aa18.23■□□□□ 0.51
VPS53-201ENST00000291074 ZFP3Q96NJ6 502 aa18.23■□□□□ 0.51
VPS53-201ENST00000291074 GFI1Q99684 422 aa18.23■□□□□ 0.51
VPS53-201ENST00000291074 LAT2Q9GZY6 243 aa18.23■□□□□ 0.51
VPS53-201ENST00000291074 GALNT9Q9HCQ5 603 aa18.23■□□□□ 0.51
VPS53-201ENST00000291074 GRHPRQ9UBQ7 328 aa18.23■□□□□ 0.51
VPS53-201ENST00000291074 ZFPL1O95159 310 aa18.23■□□□□ 0.51
VPS53-201ENST00000291074 SDHBP21912 280 aa18.23■□□□□ 0.51
VPS53-201ENST00000291074 AHCYP23526 432 aa18.23■□□□□ 0.51
VPS53-201ENST00000291074 CCDC58Q4VC31 144 aa18.23■□□□□ 0.51
VPS53-201ENST00000291074 ZNF684Q5T5D7 378 aa18.23■□□□□ 0.51
VPS53-201ENST00000291074 THOC7Q6I9Y2 204 aaKnown RBP18.23■□□□□ 0.51
VPS53-201ENST00000291074 PYHIN1Q6K0P9 492 aa18.23■□□□□ 0.51
VPS53-201ENST00000291074 LGALS14Q8TCE9 139 aa18.23■□□□□ 0.51
VPS53-201ENST00000291074 PAQR5Q9NXK6 330 aaPredicted RBP18.23■□□□□ 0.51
VPS53-201ENST00000291074 MKL2Q9ULH7 1088 aa18.23■□□□□ 0.51
VPS53-201ENST00000291074 INMT-MINDY4F8WBC2 141 aa18.22■□□□□ 0.51
VPS53-201ENST00000291074 DUX1O43812 170 aa18.22■□□□□ 0.51
VPS53-201ENST00000291074 BTCP35070 178 aa18.22■□□□□ 0.51
VPS53-201ENST00000291074 DGCR2P98153 550 aa18.22■□□□□ 0.51
VPS53-201ENST00000291074 PLCXD2Q0VAA5 305 aa18.22■□□□□ 0.51
VPS53-201ENST00000291074 HLA-DQA1Q5Y7H0 255 aa18.22■□□□□ 0.51
VPS53-201ENST00000291074 MVB12AQ96EY5 273 aa18.22■□□□□ 0.51
VPS53-201ENST00000291074 DPYSL5Q9BPU6 564 aa18.22■□□□□ 0.51
VPS53-201ENST00000291074 MESP1Q9BRJ9 268 aa18.22■□□□□ 0.51
VPS53-201ENST00000291074 VN1R1Q9GZP7 353 aa18.22■□□□□ 0.51
VPS53-201ENST00000291074 ADAM19Q9H013 955 aa18.22■□□□□ 0.51
VPS53-201ENST00000291074 CTSFQ9UBX1 484 aa18.22■□□□□ 0.51
VPS53-201ENST00000291074 MRTO4Q9UKD2 239 aaKnown RBP18.22■□□□□ 0.51
VPS53-201ENST00000291074 ADAMTS20P59510 1910 aa18.22■□□□□ 0.51
VPS53-201ENST00000291074 GATBO75879 557 aaKnown RBP18.22■□□□□ 0.51
VPS53-201ENST00000291074 ADRB1P08588 477 aa18.22■□□□□ 0.51
VPS53-201ENST00000291074 ARSBP15848 533 aa18.22■□□□□ 0.51
VPS53-201ENST00000291074 SLC6A1P30531 599 aa18.22■□□□□ 0.51
VPS53-201ENST00000291074 SLC25A1P53007 311 aa18.22■□□□□ 0.51
VPS53-201ENST00000291074 HES5Q5TA89 166 aa18.22■□□□□ 0.51
VPS53-201ENST00000291074 PLXDC1Q8IUK5 500 aa18.22■□□□□ 0.51
VPS53-201ENST00000291074 OR6V1Q8N148 313 aa18.22■□□□□ 0.51
VPS53-201ENST00000291074 D2HGDHQ8N465 521 aa18.22■□□□□ 0.51
VPS53-201ENST00000291074 YIPF7Q8N8F6 280 aa18.22■□□□□ 0.51
VPS53-201ENST00000291074 BMPERQ8N8U9 685 aa18.22■□□□□ 0.51
VPS53-201ENST00000291074 WWTR1Q9GZV5 400 aa18.22■□□□□ 0.51
VPS53-201ENST00000291074 ANKRD10Q9NXR5 420 aa18.22■□□□□ 0.51
VPS53-201ENST00000291074 ITGB1BP2Q9UKP3 347 aa18.22■□□□□ 0.51
VPS53-201ENST00000291074 A0A1B0GTH9 108 aa18.21■□□□□ 0.51
VPS53-201ENST00000291074 C11orf98E9PRG8 122 aa18.21■□□□□ 0.51
VPS53-201ENST00000291074 SCO2O43819 266 aa18.21■□□□□ 0.51
VPS53-201ENST00000291074 ORC5O43913 435 aa18.21■□□□□ 0.51
VPS53-201ENST00000291074 SLC43A1O75387 559 aa18.21■□□□□ 0.51
VPS53-201ENST00000291074 IGF2P01344 180 aa18.21■□□□□ 0.51
VPS53-201ENST00000291074 POU3F3P20264 500 aaPredicted RBP18.21■□□□□ 0.51
VPS53-201ENST00000291074 UNQ9370/PRO34162Q6UXP9 181 aa18.21■□□□□ 0.51
VPS53-201ENST00000291074 SLC16A9Q7RTY1 509 aa18.21■□□□□ 0.51
VPS53-201ENST00000291074 ZNF671Q8TAW3 534 aa18.21■□□□□ 0.51
VPS53-201ENST00000291074 OMA1Q96E52 524 aa18.21■□□□□ 0.51
VPS53-201ENST00000291074 ADAD1Q96M93 576 aaKnown RBP18.21■□□□□ 0.51
VPS53-201ENST00000291074 NUDT22Q9BRQ3 303 aa18.21■□□□□ 0.51
VPS53-201ENST00000291074 ZCCHC4Q9H5U6 513 aa18.21■□□□□ 0.51
VPS53-201ENST00000291074 MRM2Q9UI43 246 aaKnown RBP18.21■□□□□ 0.51
VPS53-201ENST00000291074 CACNG2Q9Y698 323 aa18.21■□□□□ 0.51
VPS53-201ENST00000291074 IGHV3-20A0A0C4DH32 117 aa18.21■□□□□ 0.51
VPS53-201ENST00000291074 NUDT21O43809 227 aaKnown RBP18.21■□□□□ 0.51
VPS53-201ENST00000291074 TSPAN2O60636 221 aa18.21■□□□□ 0.51
VPS53-201ENST00000291074 APEHP13798 732 aaKnown RBP18.21■□□□□ 0.51
VPS53-201ENST00000291074 SRMP19623 302 aa18.21■□□□□ 0.51
VPS53-201ENST00000291074 HSF2Q03933 536 aa18.21■□□□□ 0.51
VPS53-201ENST00000291074 SLC36A2Q495M3 483 aa18.21■□□□□ 0.51
VPS53-201ENST00000291074 PLA1AQ53H76 456 aa18.21■□□□□ 0.51
VPS53-201ENST00000291074 NOXA1Q86UR1 476 aa18.21■□□□□ 0.51
VPS53-201ENST00000291074 TIGD4Q8IY51 512 aa18.21■□□□□ 0.51
VPS53-201ENST00000291074 ZNF433Q8N7K0 673 aaPredicted RBP18.21■□□□□ 0.51
VPS53-201ENST00000291074 SYT4Q9H2B2 425 aa18.21■□□□□ 0.51
VPS53-201ENST00000291074 MCUBQ9NWR8 336 aa18.21■□□□□ 0.51
VPS53-201ENST00000291074 ABRACLQ9P1F3 81 aa18.21■□□□□ 0.51
VPS53-201ENST00000291074 ING1Q9UK53 422 aaPredicted RBP18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms