RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 RARRES3Q9UL19 164 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 LIPT1Q9Y234 373 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 NOSIPQ9Y314 301 aaKnown RBP3.8□□□□□ -1.8
LIG3-211ENST00000588713 PCLOQ9Y6V0 5065 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 PIKFYVEQ9Y2I7 2098 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 IGLV3-16A0A075B6K0 115 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 TEX13CA0A0J9YWL9 993 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 A0A1W2PRB8 838 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 CIB4A0PJX0 185 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 SLC22A23A1A5C7 686 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 PRAMEF25A6NGN4 478 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 ANKDD1BA6NHY2 528 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 AGAP14A8MT82 685 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 IQCF5A8MTL0 148 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 A8MUA0 341 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 MPTX1A8MV57 137 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 H0YIV9 168 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 H3BN98 237 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 WWP2O00308 870 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 ZNF593O00488 134 aaPredicted RBP3.79□□□□□ -1.8
LIG3-211ENST00000588713 GABRPO00591 440 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 GAPDHSO14556 408 aaPredicted RBP3.79□□□□□ -1.8
LIG3-211ENST00000588713 GPR171O14626 319 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 CTDSPLO15194 276 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 ZNF749O43361 778 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 GSTZ1O43708 216 aaPredicted RBP3.79□□□□□ -1.8
LIG3-211ENST00000588713 PCDH7O60245 1069 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 SOCS5O75159 536 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 DNAJB6O75190 326 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 TMEM127O75204 238 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 CLDN11O75508 207 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 RP2O75695 350 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 SC5DO75845 299 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 UBXN7O94888 489 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 UBL3O95164 117 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 SLC25A14O95258 325 aaPredicted RBP3.79□□□□□ -1.8
LIG3-211ENST00000588713 MPC2O95563 127 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 PAHP00439 452 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 F10P00742 488 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 CRYABP02511 175 aaKnown RBP3.79□□□□□ -1.8
LIG3-211ENST00000588713 KLK3P07288 261 aaPredicted RBP3.79□□□□□ -1.8
LIG3-211ENST00000588713 H1F0P07305 194 aaKnown RBP3.79□□□□□ -1.8
LIG3-211ENST00000588713 FHP07954 510 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 RHOCP08134 193 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 FGF2P09038 288 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 ANKRD34CP0C6C1 535 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 LAMP1P11279 417 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 ETFAP13804 333 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 PVRP15151 417 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 CPN1P15169 458 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 TYRP1P17643 537 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 TNFRSF1BP20333 461 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 NPR2P20594 1047 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 MAPK3P27361 379 aaPredicted RBP3.79□□□□□ -1.8
LIG3-211ENST00000588713 AQP1P29972 269 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 CALCRP30988 508 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 NSG1P42857 185 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 GDF5P43026 501 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 CRATP43155 626 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 RGRP47804 291 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 AVPR1BP47901 424 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 MAP2K6P52564 334 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 GAS1P54826 345 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 DCDC1P59894 354 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 RPS7P62081 194 aaKnown RBP3.79□□□□□ -1.8
LIG3-211ENST00000588713 PITPNAQ00169 270 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 FABP5Q01469 135 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 PLAURQ03405 335 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 ZNF763Q0D2J5 394 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 CAMK2DQ13557 499 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 DYRK1AQ13627 763 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 NFE2L1Q14494 772 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 FGFBP1Q14512 234 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 NTRK2Q16620 822 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 FLYWCH1Q4VC44 716 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 NHLRC3Q5JS37 347 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 ELFN2Q5R3F8 820 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 PLEKHS1Q5SXH7 462 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 DCST1Q5T197 706 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 FAM69AQ5T7M9 428 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 SLC22A10Q63ZE4 541 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 RETSATQ6NUM9 610 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 RPUSD3Q6P087 351 aaKnown RBP3.79□□□□□ -1.8
LIG3-211ENST00000588713 UNC5DQ6UXZ4 953 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 CFAP77Q6ZQR2 320 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 USP45Q70EL2 814 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 UBE2R2Q712K3 238 aaPredicted RBP3.79□□□□□ -1.8
LIG3-211ENST00000588713 KRT74Q7RTS7 529 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 OAFQ86UD1 273 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 NRROSQ86YC3 692 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 LRRC56Q8IYG6 542 aaPredicted RBP3.79□□□□□ -1.8
LIG3-211ENST00000588713 CBARPQ8N350 705 aaPredicted RBP3.79□□□□□ -1.8
LIG3-211ENST00000588713 FTMTQ8N4E7 242 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 KLHL36Q8N4N3 616 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 SPICQ8N5J4 248 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 MS4A15Q8N5U1 240 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 C3orf56Q8N813 242 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 POGLUT1Q8NBL1 392 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 CAMKVQ8NCB2 501 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 ZNF485Q8NCK3 441 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms