RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 OR8G3PP0DMU2 310 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 C5AR1P21730 350 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 DIO1P49895 249 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 ARF3P61204 181 aaPredicted RBP12.09□□□□□ -0.47
CLN3-210ENST00000563874 TAGLNQ01995 201 aaKnown RBP12.09□□□□□ -0.47
CLN3-210ENST00000563874 MGAT2Q10469 447 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 PWWP2BQ6NUJ5 590 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 GLDNQ6ZMI3 551 aaPredicted RBP12.09□□□□□ -0.47
CLN3-210ENST00000563874 NPEPL1Q8NDH3 523 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 STACQ99469 402 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 ZNF426Q9BUY5 554 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 C14orf105Q9NVL8 296 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 PILRAQ9UKJ1 303 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 FOXJ3Q9UPW0 622 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 ENTPD2Q9Y5L3 495 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 GON4LQ3T8J9 2241 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 PLSCR5A0PG75 271 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 PCP4L1A6NKN8 68 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 ARPC5O15511 151 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 PRAF2O60831 178 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 TYRP1P17643 537 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 ADH7P40394 386 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 BTN1A1Q13410 526 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 KIAA1324Q6UXG2 1013 aaKnown RBP12.09□□□□□ -0.47
CLN3-210ENST00000563874 ABHD13Q7L211 337 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 PRSS42Q7Z5A4 293 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 GPAT4Q86UL3 456 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 ADGRG3Q86Y34 549 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 FLVCR1-AS1Q8TAF5 88 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 PATE1Q8WXA2 126 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 FAM3CQ92520 227 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 MS4A7Q9GZW8 240 aaPredicted RBP12.09□□□□□ -0.47
CLN3-210ENST00000563874 SDHAF2Q9NX18 166 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 ZNF281Q9Y2X9 895 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 DENND4AQ7Z401 1863 aa12.08□□□□□ -0.47
CLN3-210ENST00000563874 OR2W5A6NFC9 320 aa12.08□□□□□ -0.48
CLN3-210ENST00000563874 CREBL2O60519 120 aaPredicted RBP12.08□□□□□ -0.48
CLN3-210ENST00000563874 CDC123O75794 336 aaPredicted RBP12.08□□□□□ -0.48
CLN3-210ENST00000563874 ECDO95905 644 aaPredicted RBP12.08□□□□□ -0.48
CLN3-210ENST00000563874 CBX7O95931 251 aa12.08□□□□□ -0.48
CLN3-210ENST00000563874 NFYAP23511 347 aaPredicted RBP12.08□□□□□ -0.48
CLN3-210ENST00000563874 RPS27P42677 84 aaKnown RBP12.08□□□□□ -0.48
CLN3-210ENST00000563874 CAPZA2P47755 286 aa12.08□□□□□ -0.48
CLN3-210ENST00000563874 AP3S2P59780 193 aa12.08□□□□□ -0.48
CLN3-210ENST00000563874 PSG6Q00889 435 aa12.08□□□□□ -0.48
CLN3-210ENST00000563874 RUNX3Q13761 415 aa12.08□□□□□ -0.48
CLN3-210ENST00000563874 NHLRC3Q5JS37 347 aa12.08□□□□□ -0.48
CLN3-210ENST00000563874 FAM198BQ6UWH4 519 aa12.08□□□□□ -0.48
CLN3-210ENST00000563874 UNQ9370/PRO34162Q6UXP9 181 aa12.08□□□□□ -0.48
CLN3-210ENST00000563874 SFTPA2Q8IWL1 248 aa12.08□□□□□ -0.48
CLN3-210ENST00000563874 Q96M85 177 aa12.08□□□□□ -0.48
CLN3-210ENST00000563874 GINS4Q9BRT9 223 aa12.08□□□□□ -0.48
CLN3-210ENST00000563874 AKAP7Q9P0M2 348 aaPredicted RBP12.08□□□□□ -0.48
CLN3-210ENST00000563874 DTX4Q9Y2E6 619 aa12.08□□□□□ -0.48
CLN3-210ENST00000563874 HEBP2Q9Y5Z4 205 aa12.08□□□□□ -0.48
CLN3-210ENST00000563874 ARHGEF17Q96PE2 2063 aaPredicted RBP12.08□□□□□ -0.48
CLN3-210ENST00000563874 hCG_1807616A0A1W2PRN6 198 aa12.08□□□□□ -0.48
CLN3-210ENST00000563874 LGALS8O00214 317 aa12.08□□□□□ -0.48
CLN3-210ENST00000563874 CYR61O00622 381 aa12.08□□□□□ -0.48
CLN3-210ENST00000563874 OR10H2O60403 315 aa12.08□□□□□ -0.48
CLN3-210ENST00000563874 MAS1P04201 325 aa12.08□□□□□ -0.48
CLN3-210ENST00000563874 MYOGP15173 224 aa12.08□□□□□ -0.48
CLN3-210ENST00000563874 PGDP52209 483 aa12.08□□□□□ -0.48
CLN3-210ENST00000563874 KCNAB1Q14722 419 aa12.08□□□□□ -0.48
CLN3-210ENST00000563874 TOMM20Q15388 145 aa12.08□□□□□ -0.48
CLN3-210ENST00000563874 C2orf68Q2NKX9 166 aa12.08□□□□□ -0.48
CLN3-210ENST00000563874 EXOSC6Q5RKV6 272 aaKnown RBP12.08□□□□□ -0.48
CLN3-210ENST00000563874 OTPQ5XKR4 325 aa12.08□□□□□ -0.48
CLN3-210ENST00000563874 SLC51BQ86UW2 128 aa12.08□□□□□ -0.48
CLN3-210ENST00000563874 ZBTB44Q8NCP5 570 aa12.08□□□□□ -0.48
CLN3-210ENST00000563874 OR5M1Q8NGP8 315 aa12.08□□□□□ -0.48
CLN3-210ENST00000563874 THEM6Q8WUY1 208 aa12.08□□□□□ -0.48
CLN3-210ENST00000563874 SGTBQ96EQ0 304 aa12.08□□□□□ -0.48
CLN3-210ENST00000563874 WBP1Q96G27 269 aa12.08□□□□□ -0.48
CLN3-210ENST00000563874 NKX3-1Q99801 234 aaPredicted RBP12.08□□□□□ -0.48
CLN3-210ENST00000563874 PLEKHA1Q9HB21 404 aa12.08□□□□□ -0.48
CLN3-210ENST00000563874 A0A087WV62 115 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 ANKRD20A5PA0PJZ0 165 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 TMEM72A0PK05 275 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 MEIS3P1A6NDR6 274 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 URADA6NGE7 173 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 BLOC1S5-TXNDC5H3BN57 136 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 PYCARD-AS1I3L0S3 204 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 NUPL2O15504 423 aaKnown RBP12.07□□□□□ -0.48
CLN3-210ENST00000563874 ADH1BP00325 375 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 IFNGR1P15260 489 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 ADRA2CP18825 462 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 LSSP48449 732 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 PRMT2P55345 433 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 LGALS3BPQ08380 585 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 CBFBQ13951 182 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 HYAL4Q2M3T9 481 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 TUSC1Q2TAM9 212 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 TMPRSS12Q86WS5 348 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 CAMKVQ8NCB2 501 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 FAM71CQ8NEG0 241 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 RERGQ96A58 199 aaPredicted RBP12.07□□□□□ -0.48
CLN3-210ENST00000563874 DNAJA3Q96EY1 480 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 TRIM2Q9C040 744 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 LMAN2LQ9H0V9 348 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms