RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 PRKAR1BP31321 381 aa6.46□□□□□ -1.37
SCFD1-222ENST00000556768 ACAA2P42765 397 aaKnown RBP6.46□□□□□ -1.37
SCFD1-222ENST00000556768 ATP5J2P56134 94 aa6.46□□□□□ -1.37
SCFD1-222ENST00000556768 RPS4XP62701 263 aaKnown RBP6.46□□□□□ -1.37
SCFD1-222ENST00000556768 BSPH1Q075Z2 132 aa6.46□□□□□ -1.37
SCFD1-222ENST00000556768 SLC17A1Q14916 467 aa6.46□□□□□ -1.37
SCFD1-222ENST00000556768 ETFDHQ16134 617 aa6.46□□□□□ -1.37
SCFD1-222ENST00000556768 CYP51A1Q16850 503 aa6.46□□□□□ -1.37
SCFD1-222ENST00000556768 HSP90B2PQ58FF3 399 aa6.46□□□□□ -1.37
SCFD1-222ENST00000556768 NCMAPQ5T1S8 102 aa6.46□□□□□ -1.37
SCFD1-222ENST00000556768 LRIF1Q5T3J3 769 aa6.46□□□□□ -1.37
SCFD1-222ENST00000556768 C1orf140Q5VVS0 124 aa6.46□□□□□ -1.37
SCFD1-222ENST00000556768 METTL21CQ5VZV1 264 aa6.46□□□□□ -1.37
SCFD1-222ENST00000556768 SLC22A25Q6T423 547 aa6.46□□□□□ -1.37
SCFD1-222ENST00000556768 C1orf229Q6ZS94 237 aaPredicted RBP6.46□□□□□ -1.37
SCFD1-222ENST00000556768 AAED1Q7RTV5 226 aa6.46□□□□□ -1.37
SCFD1-222ENST00000556768 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.46□□□□□ -1.37
SCFD1-222ENST00000556768 YTHDF3Q7Z739 585 aaKnown RBP6.46□□□□□ -1.37
SCFD1-222ENST00000556768 SERPINA11Q86U17 422 aa6.46□□□□□ -1.37
SCFD1-222ENST00000556768 FUNDC1Q8IVP5 155 aa6.46□□□□□ -1.37
SCFD1-222ENST00000556768 CLIP4Q8N3C7 705 aa6.46□□□□□ -1.37
SCFD1-222ENST00000556768 ZNF433Q8N7K0 673 aaPredicted RBP6.46□□□□□ -1.37
SCFD1-222ENST00000556768 OR52N5Q8NH56 324 aa6.46□□□□□ -1.37
SCFD1-222ENST00000556768 SLC25A36Q96CQ1 311 aa6.46□□□□□ -1.37
SCFD1-222ENST00000556768 TMEM204Q9BSN7 226 aa6.46□□□□□ -1.37
SCFD1-222ENST00000556768 ASPNQ9BXN1 380 aa6.46□□□□□ -1.37
SCFD1-222ENST00000556768 TRIM2Q9C040 744 aa6.46□□□□□ -1.37
SCFD1-222ENST00000556768 TMEM38AQ9H6F2 299 aa6.46□□□□□ -1.37
SCFD1-222ENST00000556768 EVA1AQ9H8M9 152 aa6.46□□□□□ -1.37
SCFD1-222ENST00000556768 TMEM27Q9HBJ8 222 aa6.46□□□□□ -1.37
SCFD1-222ENST00000556768 CISD1Q9NZ45 108 aaKnown RBP6.46□□□□□ -1.37
SCFD1-222ENST00000556768 GMPR2Q9P2T1 348 aaKnown RBP6.46□□□□□ -1.37
SCFD1-222ENST00000556768 MALT1Q9UDY8 824 aa6.46□□□□□ -1.37
SCFD1-222ENST00000556768 LEF1Q9UJU2 399 aaPredicted RBP6.46□□□□□ -1.37
SCFD1-222ENST00000556768 RASD1Q9Y272 281 aa6.46□□□□□ -1.37
SCFD1-222ENST00000556768 FLVCR1Q9Y5Y0 555 aa6.46□□□□□ -1.37
SCFD1-222ENST00000556768 ACANP16112 2415 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 NUP214P35658 2090 aaPredicted RBP6.46□□□□□ -1.38
SCFD1-222ENST00000556768 ZC3H12DA2A288 527 aaKnown RBP6.46□□□□□ -1.38
SCFD1-222ENST00000556768 AQP7P3A6NL99 342 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 WNT11O96014 354 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 TROVE2P10155 538 aaKnown RBP eCLIP6.46□□□□□ -1.38
SCFD1-222ENST00000556768 ZNF43P17038 809 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 MPGP29372 298 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 PRPS1P60891 318 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 IL1RL1Q01638 556 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 C1DQ13901 141 aaKnown RBP6.46□□□□□ -1.38
SCFD1-222ENST00000556768 SCARB2Q14108 478 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 MFSD13AQ14CX5 517 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 ZNF672Q499Z4 452 aaPredicted RBP6.46□□□□□ -1.38
SCFD1-222ENST00000556768 ALG10BQ5I7T1 473 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 AGAP6Q5VW22 663 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 ULK3Q6PHR2 472 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 NET1Q7Z628 596 aaPredicted RBP6.46□□□□□ -1.38
SCFD1-222ENST00000556768 RANBP3LQ86VV4 465 aaPredicted RBP6.46□□□□□ -1.38
SCFD1-222ENST00000556768 MED12LQ86YW9 2145 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 ARMC8Q8IUR7 673 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 C17orf78Q8N4C9 275 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 LSMEM1Q8N8F7 131 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 C11orf65Q8NCR3 313 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 HIPK4Q8NE63 616 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 OR9K2Q8NGE7 335 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 OR52E4Q8NGH9 312 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 MFSD8Q8NHS3 518 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 NFKBIDQ8NI38 313 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 SLC26A7Q8TE54 656 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 TSPEARQ8WU66 669 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 STON2Q8WXE9 905 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 Q96MF0 132 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 MUS81Q96NY9 551 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 EPYCQ99645 322 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 SH3GL1Q99961 368 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 FKRPQ9H9S5 495 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 C12orf10Q9HB07 376 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 MOV10Q9HCE1 1003 aaKnown RBP6.46□□□□□ -1.38
SCFD1-222ENST00000556768 EMC7Q9NPA0 242 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 VAPAQ9P0L0 249 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 SLAMF8Q9P0V8 285 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 ANGPT4Q9Y264 503 aa6.46□□□□□ -1.38
SCFD1-222ENST00000556768 ZNF587BE7ETH6 402 aa6.45□□□□□ -1.38
SCFD1-222ENST00000556768 ABCD4O14678 606 aa6.45□□□□□ -1.38
SCFD1-222ENST00000556768 PLAUP00749 431 aa6.45□□□□□ -1.38
SCFD1-222ENST00000556768 PRG2P13727 222 aa6.45□□□□□ -1.38
SCFD1-222ENST00000556768 GPX2P18283 190 aa6.45□□□□□ -1.38
SCFD1-222ENST00000556768 CDH2P19022 906 aaPredicted RBP6.45□□□□□ -1.38
SCFD1-222ENST00000556768 LOXP28300 417 aaPredicted RBP6.45□□□□□ -1.38
SCFD1-222ENST00000556768 RPS5P46782 204 aaKnown RBP6.45□□□□□ -1.38
SCFD1-222ENST00000556768 PTH2RP49190 550 aa6.45□□□□□ -1.38
SCFD1-222ENST00000556768 RGS8P57771 180 aaPredicted RBP6.45□□□□□ -1.38
SCFD1-222ENST00000556768 RBBP4Q09028 425 aa6.45□□□□□ -1.38
SCFD1-222ENST00000556768 BNIP2Q12982 314 aa6.45□□□□□ -1.38
SCFD1-222ENST00000556768 CYLC2Q14093 348 aaPredicted RBP6.45□□□□□ -1.38
SCFD1-222ENST00000556768 MAPK11Q15759 364 aa6.45□□□□□ -1.38
SCFD1-222ENST00000556768 MMEL1Q495T6 779 aa6.45□□□□□ -1.38
SCFD1-222ENST00000556768 PAGE3Q5JUK9 113 aa6.45□□□□□ -1.38
SCFD1-222ENST00000556768 FAM69AQ5T7M9 428 aa6.45□□□□□ -1.38
SCFD1-222ENST00000556768 INTS11Q5TA45 600 aaKnown RBP6.45□□□□□ -1.38
SCFD1-222ENST00000556768 FAM91A1Q658Y4 838 aa6.45□□□□□ -1.38
SCFD1-222ENST00000556768 CLEC9AQ6UXN8 241 aa6.45□□□□□ -1.38
SCFD1-222ENST00000556768 SLC30A8Q8IWU4 369 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms