RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 KCNS3Q9BQ31 491 aa13.37□□□□□ -0.27
CLSTN3-213ENST00000541953 TPK1Q9H3S4 243 aa13.37□□□□□ -0.27
CLSTN3-213ENST00000541953 BIRC5O15392 142 aa13.36□□□□□ -0.27
CLSTN3-213ENST00000541953 APEX1P27695 318 aaKnown RBP13.36□□□□□ -0.27
CLSTN3-213ENST00000541953 EPHA3P29320 983 aa13.36□□□□□ -0.27
CLSTN3-213ENST00000541953 RPS5P46782 204 aaKnown RBP13.36□□□□□ -0.27
CLSTN3-213ENST00000541953 RIN1Q13671 783 aa13.36□□□□□ -0.27
CLSTN3-213ENST00000541953 LIN52Q52LA3 116 aa13.36□□□□□ -0.27
CLSTN3-213ENST00000541953 RNF220Q5VTB9 566 aa13.36□□□□□ -0.27
CLSTN3-213ENST00000541953 SPATA21Q7Z572 469 aa13.36□□□□□ -0.27
CLSTN3-213ENST00000541953 MDP1Q86V88 176 aa13.36□□□□□ -0.27
CLSTN3-213ENST00000541953 LRRC34Q8IZ02 419 aa13.36□□□□□ -0.27
CLSTN3-213ENST00000541953 NUP37Q8NFH4 326 aa13.36□□□□□ -0.27
CLSTN3-213ENST00000541953 MAGEE2Q8TD90 523 aaPredicted RBP13.36□□□□□ -0.27
CLSTN3-213ENST00000541953 SLC25A36Q96CQ1 311 aa13.36□□□□□ -0.27
CLSTN3-213ENST00000541953 TMEM19Q96HH6 336 aa13.36□□□□□ -0.27
CLSTN3-213ENST00000541953 TAPBPLQ9BX59 468 aa13.36□□□□□ -0.27
CLSTN3-213ENST00000541953 LINC00470Q9BZP3 86 aa13.36□□□□□ -0.27
CLSTN3-213ENST00000541953 PIF1Q9H611 641 aa13.36□□□□□ -0.27
CLSTN3-213ENST00000541953 GPR35Q9HC97 309 aa13.36□□□□□ -0.27
CLSTN3-213ENST00000541953 MYOZ1Q9NP98 299 aaPredicted RBP13.36□□□□□ -0.27
CLSTN3-213ENST00000541953 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.36□□□□□ -0.27
CLSTN3-213ENST00000541953 IGKV1D-42A0A075B6H8 117 aa13.35□□□□□ -0.27
CLSTN3-213ENST00000541953 WNT9BO14905 357 aa13.35□□□□□ -0.27
CLSTN3-213ENST00000541953 UQCRBP14927 111 aa13.35□□□□□ -0.27
CLSTN3-213ENST00000541953 HNF1AP20823 631 aa13.35□□□□□ -0.27
CLSTN3-213ENST00000541953 NPRL3Q12980 569 aa13.35□□□□□ -0.27
CLSTN3-213ENST00000541953 GNA13Q14344 377 aa13.35□□□□□ -0.27
CLSTN3-213ENST00000541953 CEACAM16Q2WEN9 425 aa13.35□□□□□ -0.27
CLSTN3-213ENST00000541953 KRT71Q3SY84 523 aa13.35□□□□□ -0.27
CLSTN3-213ENST00000541953 C1QTNF12Q5T7M4 302 aa13.35□□□□□ -0.27
CLSTN3-213ENST00000541953 KRT80Q6KB66 452 aa13.35□□□□□ -0.27
CLSTN3-213ENST00000541953 RINLQ6ZS11 566 aa13.35□□□□□ -0.27
CLSTN3-213ENST00000541953 ABHD12BQ7Z5M8 362 aaPredicted RBP13.35□□□□□ -0.27
CLSTN3-213ENST00000541953 ZNF440Q8IYI8 595 aa13.35□□□□□ -0.27
CLSTN3-213ENST00000541953 TMEM123Q8N131 208 aa13.35□□□□□ -0.27
CLSTN3-213ENST00000541953 TRIML2Q8N7C3 387 aa13.35□□□□□ -0.27
CLSTN3-213ENST00000541953 OR9I1Q8NGQ6 314 aa13.35□□□□□ -0.27
CLSTN3-213ENST00000541953 MS4A3Q96HJ5 214 aa13.35□□□□□ -0.27
CLSTN3-213ENST00000541953 TMEM109Q9BVC6 243 aa13.35□□□□□ -0.27
CLSTN3-213ENST00000541953 ZNF442Q9H7R0 627 aa13.35□□□□□ -0.27
CLSTN3-213ENST00000541953 P2RX2Q9UBL9 471 aa13.35□□□□□ -0.27
CLSTN3-213ENST00000541953 RASD1Q9Y272 281 aa13.35□□□□□ -0.27
CLSTN3-213ENST00000541953 OR6C65A6NJZ3 312 aa13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 RPL36A-HNRNPH2H7BZ11 118 aa13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 M0R082 166 aa13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 RFXANKO14593 260 aa13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 TRAF3IP2O43734 574 aaPredicted RBP13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 FZD7O75084 574 aa13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 VAMP5O95183 116 aa13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 HPRP00739 348 aa13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 ADRA2AP08913 450 aa13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 CBR1P16152 277 aa13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 NCF2P19878 526 aaPredicted RBP13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 NPR2P20594 1047 aa13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 CBLP22681 906 aa13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 HTR2AP28223 471 aa13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 CRATP43155 626 aa13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 CDH15P55291 814 aa13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 DSTNP60981 165 aa13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 SNTB2Q13425 540 aaKnown RBP13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 ADRM1Q16186 407 aa13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 C3orf36Q3SXR2 165 aa13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 MAVSQ7Z434 540 aa13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 C10orf111Q8N326 155 aa13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 ZNF786Q8N393 782 aa13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 OR4F15Q8NGB8 312 aa13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 MFSD8Q8NHS3 518 aa13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 ZNF417Q8TAU3 575 aa13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 MAL2Q969L2 176 aa13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 TAAR8Q969N4 342 aa13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 ZNF587Q96SQ5 575 aaPredicted RBP13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 RAB1BQ9H0U4 201 aa13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 TPT1P8Q9HAU6 139 aa13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 CRLF2Q9HC73 371 aa13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 MYEF2Q9P2K5 600 aaKnown RBP13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 TMEFF2Q9UIK5 374 aaPredicted RBP13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 V9GYY5 206 aaPredicted RBP13.34□□□□□ -0.27
CLSTN3-213ENST00000541953 TCF21O43680 179 aa13.33□□□□□ -0.28
CLSTN3-213ENST00000541953 VENTXO95231 258 aa13.33□□□□□ -0.28
CLSTN3-213ENST00000541953 AHSA1O95433 338 aa13.33□□□□□ -0.28
CLSTN3-213ENST00000541953 HLA-HP01893 362 aa13.33□□□□□ -0.28
CLSTN3-213ENST00000541953 HLA-DOBP13765 273 aa13.33□□□□□ -0.28
CLSTN3-213ENST00000541953 CHN2P52757 468 aa13.33□□□□□ -0.28
CLSTN3-213ENST00000541953 CRISP3P54108 245 aa13.33□□□□□ -0.28
CLSTN3-213ENST00000541953 COPZ1P61923 177 aa13.33□□□□□ -0.28
CLSTN3-213ENST00000541953 STX3Q13277 289 aa13.33□□□□□ -0.28
CLSTN3-213ENST00000541953 SQLEQ14534 574 aa13.33□□□□□ -0.28
CLSTN3-213ENST00000541953 LRP11Q86VZ4 500 aa13.33□□□□□ -0.28
CLSTN3-213ENST00000541953 MEX3DQ86XN8 651 aaKnown RBP13.33□□□□□ -0.28
CLSTN3-213ENST00000541953 FAM169BQ8N8A8 192 aa13.33□□□□□ -0.28
CLSTN3-213ENST00000541953 LINC01356Q8N9X3 169 aa13.33□□□□□ -0.28
CLSTN3-213ENST00000541953 STK35Q8TDR2 534 aa13.33□□□□□ -0.28
CLSTN3-213ENST00000541953 CKAP2Q8WWK9 683 aa13.33□□□□□ -0.28
CLSTN3-213ENST00000541953 ZNF75AQ96N20 296 aa13.33□□□□□ -0.28
CLSTN3-213ENST00000541953 OR2M2Q96R28 347 aa13.33□□□□□ -0.28
CLSTN3-213ENST00000541953 SPATA9Q9BWV2 254 aa13.33□□□□□ -0.28
CLSTN3-213ENST00000541953 MRPL37Q9BZE1 423 aaKnown RBP13.33□□□□□ -0.28
CLSTN3-213ENST00000541953 NARFLQ9H6Q4 476 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms