RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 ATP5SQ99766 215 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 NKX3-1Q99801 234 aaPredicted RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 CIB1Q99828 191 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 MICU1Q9BPX6 476 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SELENOSQ9BQE4 189 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 PSD2Q9BQI7 771 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 C7orf50Q9BRJ6 194 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMEM246Q9BRR3 403 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 PELOQ9BRX2 385 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF670Q9BS34 389 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC35A5Q9BS91 424 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 TIMM29Q9BSF4 260 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 CNPY3Q9BT09 278 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 DCUN1D5Q9BTE7 237 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 MED10Q9BTT4 135 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 CABLES2Q9BTV7 478 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 RSG1Q9BU20 258 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 RPP25Q9BUL9 199 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 APOOQ9BUR5 198 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 C9orf16Q9BUW7 83 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF426Q9BUY5 554 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 TRAF4Q9BUZ4 470 aaPredicted RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 PAPOLGQ9BWT3 736 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 GPR174Q9BXC1 333 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 MAP1LC3CQ9BXW4 147 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 POLDIP3Q9BY77 421 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 POTEKPQ9BYX7 375 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 UPF3BQ9BZI7 483 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SPRY4Q9C004 299 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZYG11BQ9C0D3 744 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ROGDIQ9GZN7 287 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ELOVL4Q9GZR5 314 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SRRQ9GZT4 340 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 LAT2Q9GZY6 243 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 NAT10Q9H0A0 1025 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 NXF5Q9H1B4 397 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 UPF3AQ9H1J1 476 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 DEFB129Q9H1M3 183 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 OPN3Q9H1Y3 402 aaPredicted RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR2AG1Q9H205 316 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 MMP28Q9H239 520 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 CXXC4Q9H2H0 198 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC38A1Q9H2H9 487 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 PPA2Q9H2U2 334 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR51M1Q9H341 326 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 NXF3Q9H4D5 531 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 RNF41Q9H4P4 317 aaPredicted RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 BICC1Q9H694 974 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF385DQ9H6B1 395 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 REEP4Q9H6H4 257 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ARMC7Q9H6L4 198 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ASB8Q9H765 288 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ATP13A3Q9H7F0 1226 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 TRIM45Q9H8W5 580 aaPredicted RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 WDR54Q9H977 334 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 MAP6D1Q9H9H5 199 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 GPN2Q9H9Y4 310 aaPredicted RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 Q9HAA7 133 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF556Q9HAH1 456 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 UGT1A10Q9HAW8 530 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 NTN4Q9HB63 628 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 NMUR1Q9HB89 426 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 NMRAL1Q9HBL8 299 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 POPDC2Q9HBU9 364 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 APOBEC3GQ9HC16 384 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC25A19Q9HC21 320 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 MRM3Q9HC36 420 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZBTB20Q9HC78 741 aaPredicted RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ANKHQ9HCJ1 492 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 C6orf50Q9HD87 102 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 A4GALTQ9NPC4 353 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 MED4Q9NPJ6 270 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR2S2Q9NQN1 319 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC17A5Q9NRA2 495 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SDR39U1Q9NRG7 319 aaPredicted RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SAMSN1Q9NSI8 373 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 NRBP2Q9NSY0 501 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 CUTCQ9NTM9 273 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 DCAF13Q9NV06 445 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 IMP3Q9NV31 184 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 C1orf109Q9NX04 203 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ELOVL2Q9NXB9 296 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 TEX10Q9NXF1 929 aaPredicted RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 MS4A12Q9NXJ0 267 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 CLEC5AQ9NY25 188 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SIGLEC8Q9NYZ4 499 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 PTTG3PQ9NZH4 202 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 IL37Q9NZH6 218 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 MSRB1Q9NZV6 116 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 CCDC59Q9P031 241 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 VAPAQ9P0L0 249 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SENP1Q9P0U3 644 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 MYEF2Q9P2K5 600 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 WRAP73Q9P2S5 460 aaPredicted RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC17A7Q9P2U7 560 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 APOBEC3BQ9UH17 382 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 LGALS13Q9UHV8 139 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 MRM2Q9UI43 246 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 LNPEPQ9UIQ6 1025 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SIX4Q9UIU6 781 aa0.5□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms