RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 HNRNPA2B1P22626 353 aaKnown RBP3.5□□□□□ -1.85
HMGB3-203ENST00000430118 EDNRAP25101 427 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 CD82P27701 267 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 PSMA5P28066 241 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 ADRA1AP35348 466 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 HCAR3P49019 387 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 CLDN6P56747 220 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 NANOS2P60321 138 aaKnown RBP3.5□□□□□ -1.85
HMGB3-203ENST00000430118 ACTR1AP61163 376 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 HERVK_113P63132 956 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 ERVK-8P63133 956 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 ACY1Q03154 408 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 LRRC63Q05C16 580 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 SPAG1Q07617 926 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 RIGQ13278 110 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 ORC2Q13416 577 aaPredicted RBP3.5□□□□□ -1.85
HMGB3-203ENST00000430118 C16orf72Q14CZ0 275 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 NECTIN1Q15223 517 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 ANKRD55Q3KP44 614 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 TNFAIP8L3Q5GJ75 292 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 ZNF311Q5JNZ3 666 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 SDHAF4Q5VUM1 108 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 LIPJQ5W064 366 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 WSCD1Q658N2 575 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 DUPD1Q68J44 220 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 NIPAL3Q6P499 406 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 BLOC1S2Q6QNY1 142 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 VASH2Q86V25 355 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 RANBP3LQ86VV4 465 aaPredicted RBP3.5□□□□□ -1.85
HMGB3-203ENST00000430118 CATSPER3Q86XQ3 398 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 HPS6Q86YV9 775 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 LRRC34Q8IZ02 419 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 PARP8Q8N3A8 854 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 TCAIMQ8N3R3 496 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 ASCC1Q8N9N2 400 aaKnown RBP3.5□□□□□ -1.85
HMGB3-203ENST00000430118 OR52M1Q8NGK5 317 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 ZNF420Q8TAQ5 688 aaPredicted RBP3.5□□□□□ -1.85
HMGB3-203ENST00000430118 MAPK15Q8TD08 544 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 SHC3Q92529 594 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 STMN2Q93045 179 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 FBXO32Q969P5 355 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 RAD51AP1Q96B01 352 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 BIRC7Q96CA5 298 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 PDXPQ96GD0 296 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 PLEKHA8Q96JA3 519 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 MARK4Q96L34 752 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 CXorf58Q96LI9 332 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 TCEANC2Q96MN5 208 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 SELENOSQ9BQE4 189 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 LLPHQ9BRT6 129 aaKnown RBP3.5□□□□□ -1.85
HMGB3-203ENST00000430118 WACQ9BTA9 647 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 RBM24Q9BX46 236 aaKnown RBP3.5□□□□□ -1.85
HMGB3-203ENST00000430118 PINK1Q9BXM7 581 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 ERVK-6Q9BXR3 956 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 TRIM9Q9C026 710 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 STRADBQ9C0K7 418 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 ELOVL4Q9GZR5 314 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 HOXD1Q9GZZ0 328 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 RAB33BQ9H082 229 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 ATP13A3Q9H7F0 1226 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 VPS37BQ9H9H4 285 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 NTN4Q9HB63 628 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 POLD4Q9HCU8 107 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 ASCL3Q9NQ33 180 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 STAU2Q9NUL3 570 aaKnown RBP eCLIP3.5□□□□□ -1.85
HMGB3-203ENST00000430118 SENP1Q9P0U3 644 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 THAP10Q9P2Z0 257 aaPredicted RBP3.5□□□□□ -1.85
HMGB3-203ENST00000430118 MIOXQ9UGB7 285 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 POMT2Q9UKY4 750 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 CDH9Q9ULB4 789 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 ERGIC3Q9Y282 383 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 CAB39Q9Y376 341 aaPredicted RBP3.5□□□□□ -1.85
HMGB3-203ENST00000430118 MGAQ8IWI9 3026 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 SPTAN1Q13813 2472 aaKnown RBP3.5□□□□□ -1.85
HMGB3-203ENST00000430118 ASXL3Q9C0F0 2248 aa3.5□□□□□ -1.85
HMGB3-203ENST00000430118 MN1Q10571 1320 aaPredicted RBP3.49□□□□□ -1.85
HMGB3-203ENST00000430118 DENND4CQ5VZ89 1909 aa3.49□□□□□ -1.85
HMGB3-203ENST00000430118 SPENQ96T58 3664 aaKnown RBP3.49□□□□□ -1.85
HMGB3-203ENST00000430118 ATG2BQ96BY7 2078 aa3.49□□□□□ -1.85
HMGB3-203ENST00000430118 IGHV4-4A0A075B6R2 117 aa3.49□□□□□ -1.85
HMGB3-203ENST00000430118 C15orf38-AP3S2A0A0A6YYH1 394 aa3.49□□□□□ -1.85
HMGB3-203ENST00000430118 A0A0U1RQV5 110 aa3.49□□□□□ -1.85
HMGB3-203ENST00000430118 HEATR9A2RTY3 570 aa3.49□□□□□ -1.85
HMGB3-203ENST00000430118 RNF222A6NCQ9 220 aa3.49□□□□□ -1.85
HMGB3-203ENST00000430118 CCDC160A6NGH7 325 aa3.49□□□□□ -1.85
HMGB3-203ENST00000430118 FAM47DPA6NHR8 397 aa3.49□□□□□ -1.85
HMGB3-203ENST00000430118 PRSS44E7EML9 344 aa3.49□□□□□ -1.85
HMGB3-203ENST00000430118 H3BTX0 84 aa3.49□□□□□ -1.85
HMGB3-203ENST00000430118 hCG_2039718K7EN88 272 aa3.49□□□□□ -1.85
HMGB3-203ENST00000430118 P2RY10O00398 339 aa3.49□□□□□ -1.85
HMGB3-203ENST00000430118 SLC16A4O15374 487 aa3.49□□□□□ -1.85
HMGB3-203ENST00000430118 DENRO43583 198 aaKnown RBP3.49□□□□□ -1.85
HMGB3-203ENST00000430118 BUB3O43684 328 aa3.49□□□□□ -1.85
HMGB3-203ENST00000430118 SPOPO43791 374 aa3.49□□□□□ -1.85
HMGB3-203ENST00000430118 EDIL3O43854 480 aa3.49□□□□□ -1.85
HMGB3-203ENST00000430118 CIDEAO60543 219 aa3.49□□□□□ -1.85
HMGB3-203ENST00000430118 CDC123O75794 336 aaPredicted RBP3.49□□□□□ -1.85
HMGB3-203ENST00000430118 STK17BO94768 372 aa3.49□□□□□ -1.85
HMGB3-203ENST00000430118 TNFSF15O95150 251 aa3.49□□□□□ -1.85
HMGB3-203ENST00000430118 SNX4O95219 450 aa3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms