RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.11□□□□□ -0.63
CD44-203ENST00000278386 ARPC4-TTLL3A0A0A6YYG9 625 aa11.11□□□□□ -0.63
CD44-203ENST00000278386 AKAP8O43823 692 aaKnown RBP11.11□□□□□ -0.63
CD44-203ENST00000278386 SLC43A1O75387 559 aa11.11□□□□□ -0.63
CD44-203ENST00000278386 NUDT7P0C024 238 aa11.11□□□□□ -0.63
CD44-203ENST00000278386 CECR9P0C854 216 aa11.11□□□□□ -0.63
CD44-203ENST00000278386 SERPINF1P36955 418 aa11.11□□□□□ -0.63
CD44-203ENST00000278386 CAPZA2P47755 286 aa11.11□□□□□ -0.63
CD44-203ENST00000278386 GZMKP49863 264 aa11.11□□□□□ -0.63
CD44-203ENST00000278386 STX1BP61266 288 aa11.11□□□□□ -0.63
CD44-203ENST00000278386 NCALDP61601 193 aa11.11□□□□□ -0.63
CD44-203ENST00000278386 NAAAQ02083 359 aa11.11□□□□□ -0.63
CD44-203ENST00000278386 NPRL3Q12980 569 aa11.11□□□□□ -0.63
CD44-203ENST00000278386 C1DQ13901 141 aaKnown RBP11.11□□□□□ -0.63
CD44-203ENST00000278386 SWI5Q1ZZU3 235 aa11.11□□□□□ -0.63
CD44-203ENST00000278386 IQCCQ4KMZ1 466 aa11.11□□□□□ -0.63
CD44-203ENST00000278386 FAM166AQ6J272 317 aa11.11□□□□□ -0.63
CD44-203ENST00000278386 ANKRD16Q6P6B7 361 aa11.11□□□□□ -0.63
CD44-203ENST00000278386 SLC2A7Q6PXP3 512 aa11.11□□□□□ -0.63
CD44-203ENST00000278386 LINGO2Q7L985 606 aa11.11□□□□□ -0.63
CD44-203ENST00000278386 MAVSQ7Z434 540 aa11.11□□□□□ -0.63
CD44-203ENST00000278386 EPHX4Q8IUS5 362 aa11.11□□□□□ -0.63
CD44-203ENST00000278386 KDM8Q8N371 416 aa11.11□□□□□ -0.63
CD44-203ENST00000278386 MFSD8Q8NHS3 518 aa11.11□□□□□ -0.63
CD44-203ENST00000278386 RNF217Q8TC41 542 aa11.11□□□□□ -0.63
CD44-203ENST00000278386 BCL2L2Q92843 193 aaPredicted RBP11.11□□□□□ -0.63
CD44-203ENST00000278386 MAL2Q969L2 176 aa11.11□□□□□ -0.63
CD44-203ENST00000278386 SEC61A2Q9H9S3 476 aa11.11□□□□□ -0.63
CD44-203ENST00000278386 SDR39U1Q9NRG7 319 aaPredicted RBP11.11□□□□□ -0.63
CD44-203ENST00000278386 TMEM160Q9NX00 188 aa11.11□□□□□ -0.63
CD44-203ENST00000278386 SEC14L4Q9UDX3 406 aa11.11□□□□□ -0.63
CD44-203ENST00000278386 CHST2Q9Y4C5 530 aa11.11□□□□□ -0.63
CD44-203ENST00000278386 B9A039 149 aa11.1□□□□□ -0.63
CD44-203ENST00000278386 NDUFS8O00217 210 aa11.1□□□□□ -0.63
CD44-203ENST00000278386 AIM2O14862 343 aa11.1□□□□□ -0.63
CD44-203ENST00000278386 LMX1BO60663 402 aa11.1□□□□□ -0.63
CD44-203ENST00000278386 NPIPB7O75200 414 aa11.1□□□□□ -0.63
CD44-203ENST00000278386 PDE5AO76074 875 aa11.1□□□□□ -0.63
CD44-203ENST00000278386 OR4A8P0C604 315 aa11.1□□□□□ -0.63
CD44-203ENST00000278386 APEHP13798 732 aaKnown RBP11.1□□□□□ -0.63
CD44-203ENST00000278386 PAX7P23759 505 aa11.1□□□□□ -0.63
CD44-203ENST00000278386 IGFBP5P24593 272 aa11.1□□□□□ -0.63
CD44-203ENST00000278386 IDH3GP51553 393 aaPredicted RBP11.1□□□□□ -0.63
CD44-203ENST00000278386 MAGOHP61326 146 aaKnown RBP11.1□□□□□ -0.63
CD44-203ENST00000278386 FADDQ13158 208 aa11.1□□□□□ -0.63
CD44-203ENST00000278386 RGNQ15493 299 aa11.1□□□□□ -0.63
CD44-203ENST00000278386 MST1LQ2TV78 715 aa11.1□□□□□ -0.63
CD44-203ENST00000278386 IL17RELQ6ZVW7 336 aa11.1□□□□□ -0.63
CD44-203ENST00000278386 GPR137CQ8N3F9 429 aa11.1□□□□□ -0.63
CD44-203ENST00000278386 ARIH2OSQ8N7S6 290 aa11.1□□□□□ -0.63
CD44-203ENST00000278386 GOLGA6L1Q8N7Z2 621 aa11.1□□□□□ -0.63
CD44-203ENST00000278386 SLC38A4Q969I6 547 aa11.1□□□□□ -0.63
CD44-203ENST00000278386 KTI12Q96EK9 354 aaPredicted RBP11.1□□□□□ -0.63
CD44-203ENST00000278386 BOD1Q96IK1 185 aa11.1□□□□□ -0.63
CD44-203ENST00000278386 ZNF317Q96PQ6 595 aaPredicted RBP11.1□□□□□ -0.63
CD44-203ENST00000278386 PTDSS2Q9BVG9 487 aa11.1□□□□□ -0.63
CD44-203ENST00000278386 LINC00470Q9BZP3 86 aa11.1□□□□□ -0.63
CD44-203ENST00000278386 PAIP1Q9H074 479 aaKnown RBP11.1□□□□□ -0.63
CD44-203ENST00000278386 NELFAQ9H3P2 528 aa11.1□□□□□ -0.63
CD44-203ENST00000278386 MOV10Q9HCE1 1003 aaKnown RBP11.1□□□□□ -0.63
CD44-203ENST00000278386 MYOZ1Q9NP98 299 aaPredicted RBP11.1□□□□□ -0.63
CD44-203ENST00000278386 A4GALTQ9NPC4 353 aa11.1□□□□□ -0.63
CD44-203ENST00000278386 CRNNQ9UBG3 495 aaPredicted RBP11.1□□□□□ -0.63
CD44-203ENST00000278386 RCE1Q9Y256 329 aa11.1□□□□□ -0.63
CD44-203ENST00000278386 PCDHB14Q9Y5E9 798 aa11.1□□□□□ -0.63
CD44-203ENST00000278386 SVEP1Q4LDE5 3571 aa11.1□□□□□ -0.63
CD44-203ENST00000278386 LOC100289279A0A1B0GTE1 492 aa11.09□□□□□ -0.63
CD44-203ENST00000278386 VWC2LB2RUY7 222 aa11.09□□□□□ -0.63
CD44-203ENST00000278386 FTCDNL1E5RQL4 147 aa11.09□□□□□ -0.63
CD44-203ENST00000278386 hCG_2039718K7EN88 272 aa11.09□□□□□ -0.63
CD44-203ENST00000278386 M0R082 166 aa11.09□□□□□ -0.63
CD44-203ENST00000278386 CLIC1O00299 241 aa11.09□□□□□ -0.63
CD44-203ENST00000278386 SEC14L2O76054 403 aa11.09□□□□□ -0.63
CD44-203ENST00000278386 ERCC1P07992 297 aaPredicted RBP11.09□□□□□ -0.63
CD44-203ENST00000278386 CELA3BP08861 270 aa11.09□□□□□ -0.63
CD44-203ENST00000278386 SRD5A1P18405 259 aa11.09□□□□□ -0.63
CD44-203ENST00000278386 HNF1AP20823 631 aa11.09□□□□□ -0.63
CD44-203ENST00000278386 CBLP22681 906 aa11.09□□□□□ -0.63
CD44-203ENST00000278386 GRPRP30550 384 aa11.09□□□□□ -0.63
CD44-203ENST00000278386 CALCRP30988 508 aa11.09□□□□□ -0.63
CD44-203ENST00000278386 NR4A2P43354 598 aa11.09□□□□□ -0.63
CD44-203ENST00000278386 PPOXP50336 477 aa11.09□□□□□ -0.63
CD44-203ENST00000278386 ARF1P84077 181 aaKnown RBP11.09□□□□□ -0.63
CD44-203ENST00000278386 EGR4Q05215 589 aa11.09□□□□□ -0.63
CD44-203ENST00000278386 ADIPOQQ15848 244 aa11.09□□□□□ -0.63
CD44-203ENST00000278386 GCNT6Q5T4J0 391 aa11.09□□□□□ -0.63
CD44-203ENST00000278386 FAM69AQ5T7M9 428 aa11.09□□□□□ -0.63
CD44-203ENST00000278386 OR4F15Q8NGB8 312 aa11.09□□□□□ -0.63
CD44-203ENST00000278386 NFKBIDQ8NI38 313 aa11.09□□□□□ -0.63
CD44-203ENST00000278386 ZNF417Q8TAU3 575 aa11.09□□□□□ -0.63
CD44-203ENST00000278386 MAGEE2Q8TD90 523 aaPredicted RBP11.09□□□□□ -0.63
CD44-203ENST00000278386 GTF2H4Q92759 462 aa11.09□□□□□ -0.63
CD44-203ENST00000278386 SLC35B4Q969S0 331 aa11.09□□□□□ -0.63
CD44-203ENST00000278386 OXGR1Q96P68 337 aa11.09□□□□□ -0.63
CD44-203ENST00000278386 ZNF587Q96SQ5 575 aaPredicted RBP11.09□□□□□ -0.63
CD44-203ENST00000278386 SELENONQ9NZV5 590 aa11.09□□□□□ -0.63
CD44-203ENST00000278386 USH1CQ9Y6N9 552 aa11.09□□□□□ -0.63
CD44-203ENST00000278386 IGHV4-61A0A0C4DH41 118 aa11.08□□□□□ -0.64
CD44-203ENST00000278386 LOC390937A0A1W2PQ73 354 aa11.08□□□□□ -0.64
CD44-203ENST00000278386 POLR3GO15318 223 aaPredicted RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms