RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 FTCDNL1E5RQL4 147 aa13.43□□□□□ -0.26
TRIM28-203ENST00000593582 PDLIM1O00151 329 aa13.43□□□□□ -0.26
TRIM28-203ENST00000593582 ITGA5P08648 1049 aa13.43□□□□□ -0.26
TRIM28-203ENST00000593582 FLNAP21333 2647 aaKnown RBP13.43□□□□□ -0.26
TRIM28-203ENST00000593582 MPGP29372 298 aa13.43□□□□□ -0.26
TRIM28-203ENST00000593582 FOXG1P55316 489 aaPredicted RBP13.43□□□□□ -0.26
TRIM28-203ENST00000593582 PCBP3P57721 371 aaKnown RBP13.43□□□□□ -0.26
TRIM28-203ENST00000593582 DMTNQ08495 405 aa13.43□□□□□ -0.26
TRIM28-203ENST00000593582 TRMT5Q32P41 509 aaKnown RBP13.43□□□□□ -0.26
TRIM28-203ENST00000593582 MMEL1Q495T6 779 aa13.43□□□□□ -0.26
TRIM28-203ENST00000593582 FAM69AQ5T7M9 428 aa13.43□□□□□ -0.26
TRIM28-203ENST00000593582 C9orf135Q5VTT2 229 aa13.43□□□□□ -0.26
TRIM28-203ENST00000593582 ABHD12BQ7Z5M8 362 aaPredicted RBP13.43□□□□□ -0.26
TRIM28-203ENST00000593582 NET1Q7Z628 596 aaPredicted RBP13.43□□□□□ -0.26
TRIM28-203ENST00000593582 YTHDF3Q7Z739 585 aaKnown RBP13.43□□□□□ -0.26
TRIM28-203ENST00000593582 KBTBD8Q8NFY9 601 aa13.43□□□□□ -0.26
TRIM28-203ENST00000593582 LILRB1Q8NHL6 650 aaPredicted RBP13.43□□□□□ -0.26
TRIM28-203ENST00000593582 SMAP2Q8WU79 429 aaPredicted RBP13.43□□□□□ -0.26
TRIM28-203ENST00000593582 IGFBPL1Q8WX77 278 aa13.43□□□□□ -0.26
TRIM28-203ENST00000593582 SLC38A4Q969I6 547 aa13.43□□□□□ -0.26
TRIM28-203ENST00000593582 RADILQ96JH8 1075 aa13.43□□□□□ -0.26
TRIM28-203ENST00000593582 SH3GL1Q99961 368 aa13.43□□□□□ -0.26
TRIM28-203ENST00000593582 PRR14Q9BWN1 585 aa13.43□□□□□ -0.26
TRIM28-203ENST00000593582 NPAP1Q9NZP6 1156 aa13.43□□□□□ -0.26
TRIM28-203ENST00000593582 SLC25A15Q9Y619 301 aa13.43□□□□□ -0.26
TRIM28-203ENST00000593582 TRAV36DV7A0A075B6V5 113 aa13.42□□□□□ -0.26
TRIM28-203ENST00000593582 OR6C65A6NJZ3 312 aa13.42□□□□□ -0.26
TRIM28-203ENST00000593582 M0QX08 132 aa13.42□□□□□ -0.26
TRIM28-203ENST00000593582 FBP2O00757 339 aa13.42□□□□□ -0.26
TRIM28-203ENST00000593582 ABCD4O14678 606 aa13.42□□□□□ -0.26
TRIM28-203ENST00000593582 C8BP07358 591 aa13.42□□□□□ -0.26
TRIM28-203ENST00000593582 PAX1P15863 534 aa13.42□□□□□ -0.26
TRIM28-203ENST00000593582 PTH2RP49190 550 aa13.42□□□□□ -0.26
TRIM28-203ENST00000593582 GUCY1A3Q02108 690 aa13.42□□□□□ -0.26
TRIM28-203ENST00000593582 SF3A3Q12874 501 aaKnown RBP eCLIP13.42□□□□□ -0.264e-10■■□□□ 12.7
TRIM28-203ENST00000593582 MAPRE2Q15555 327 aa13.42□□□□□ -0.26
TRIM28-203ENST00000593582 OR1Q1Q15612 314 aa13.42□□□□□ -0.26
TRIM28-203ENST00000593582 INTS11Q5TA45 600 aaKnown RBP13.42□□□□□ -0.26
TRIM28-203ENST00000593582 PATL1Q86TB9 770 aaKnown RBP13.42□□□□□ -0.26
TRIM28-203ENST00000593582 C17orf78Q8N4C9 275 aa13.42□□□□□ -0.26
TRIM28-203ENST00000593582 OR10A6Q8NH74 314 aa13.42□□□□□ -0.26
TRIM28-203ENST00000593582 TAAR8Q969N4 342 aa13.42□□□□□ -0.26
TRIM28-203ENST00000593582 EPYCQ99645 322 aa13.42□□□□□ -0.26
TRIM28-203ENST00000593582 AMBRA1Q9C0C7 1298 aa13.42□□□□□ -0.26
TRIM28-203ENST00000593582 MED4Q9NPJ6 270 aa13.42□□□□□ -0.26
TRIM28-203ENST00000593582 MGAT4BQ9UQ53 548 aa13.42□□□□□ -0.26
TRIM28-203ENST00000593582 B3GALT5Q9Y2C3 310 aa13.42□□□□□ -0.26
TRIM28-203ENST00000593582 RAI1Q7Z5J4 1906 aaPredicted RBP13.42□□□□□ -0.26
TRIM28-203ENST00000593582 PRR14LQ5THK1 2151 aa13.42□□□□□ -0.26
TRIM28-203ENST00000593582 SETD2Q9BYW2 2564 aaPredicted RBP13.41□□□□□ -0.26
TRIM28-203ENST00000593582 DSCAMO60469 2012 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 IGKV1D-42A0A075B6H8 117 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 A0A087WUJ7 227 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 A0A0B4J2E0 115 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 A0A1B0GX12 115 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 A0A1W2PR80 420 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 ZNF587BE7ETH6 402 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 AIM2O14862 343 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 FMO6PO60774 539 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 LGI1O95970 557 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 NPPAP01160 153 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 OPN1SWP03999 348 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 ZNF43P17038 809 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 CDH2P19022 906 aaPredicted RBP13.41□□□□□ -0.26
TRIM28-203ENST00000593582 PTAFRP25105 342 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 PCGF2P35227 344 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 SELENOPP49908 381 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 ZNF83P51522 516 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 CDH11P55287 796 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 RPS4XP62701 263 aaKnown RBP13.41□□□□□ -0.26
TRIM28-203ENST00000593582 KLF10Q13118 480 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 C1DQ13901 141 aaKnown RBP13.41□□□□□ -0.26
TRIM28-203ENST00000593582 MFSD13AQ14CX5 517 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 DUSP7Q16829 419 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 COQ5Q5HYK3 327 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 SWT1Q5T5J6 900 aaKnown RBP13.41□□□□□ -0.26
TRIM28-203ENST00000593582 C1QTNF12Q5T7M4 302 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 NANOGP8Q6NSW7 305 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 NIPAL3Q6P499 406 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 KLHL24Q6TFL4 600 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 H1FNTQ75WM6 255 aaPredicted RBP13.41□□□□□ -0.26
TRIM28-203ENST00000593582 EPHX4Q8IUS5 362 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 PIAS4Q8N2W9 510 aaPredicted RBP13.41□□□□□ -0.26
TRIM28-203ENST00000593582 KDM8Q8N371 416 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 SLC26A7Q8TE54 656 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 NEUROG1Q92886 237 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 LRRC58Q96CX6 371 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 C18orf12Q96KH6 178 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 Q96MF0 132 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 WFDC6Q9BQY6 131 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 CCDC134Q9H6E4 229 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 NANOGQ9H9S0 305 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 SAR1AQ9NR31 198 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 ZNF701Q9NV72 531 aaPredicted RBP13.41□□□□□ -0.26
TRIM28-203ENST00000593582 FAIMQ9NVQ4 179 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 CISD1Q9NZ45 108 aaKnown RBP13.41□□□□□ -0.26
TRIM28-203ENST00000593582 AMDHD2Q9Y303 409 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 MAGED1Q9Y5V3 778 aaPredicted RBP13.41□□□□□ -0.26
TRIM28-203ENST00000593582 NF1P21359 2839 aa13.41□□□□□ -0.26
TRIM28-203ENST00000593582 ACANP16112 2415 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms