RNA–Protein interactions for RNA: ENST00000582114.5

CDK5RAP3-223, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 2

Gene CDK5RAP3, Length 647 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-223	ENST00000582114	TXNL4A	P83876	142 aa	Known RBP	10.14	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	SRSF2	Q01130	221 aa	Known RBP	10.14	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	GSTA3	Q16772	222 aa		10.14	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	TBRG1	Q3YBR2	411 aa		10.14	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	SLC9B1	Q4ZJI4	515 aa		10.14	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	TNFAIP8L3	Q5GJ75	292 aa		10.14	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	C1orf140	Q5VVS0	124 aa		10.14	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	PRAMEF8	Q5VWM4	474 aa		10.14	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	PRAMEF7	Q5VXH5	474 aa		10.14	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	CYB5R2	Q6BCY4	276 aa		10.14	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	CREB3L2	Q70SY1	520 aa		10.14	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	OR9I1	Q8NGQ6	314 aa		10.14	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	OR1K1	Q8NGR3	316 aa		10.14	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	SLC38A5	Q8WUX1	472 aa		10.14	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	VPS33A	Q96AX1	596 aa		10.14	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	SLC25A36	Q96CQ1	311 aa		10.14	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	SLC38A2	Q96QD8	506 aa		10.14	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	VRK1	Q99986	396 aa	Predicted RBP	10.14	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	SF3B5	Q9BWJ5	86 aa	Known RBP	10.14	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	BEX2	Q9BXY8	128 aa		10.14	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	TPT1P8	Q9HAU6	139 aa		10.14	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	TMEM45A	Q9NWC5	275 aa		10.14	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	SEC14L4	Q9UDX3	406 aa		10.14	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	CDC42EP3	Q9UKI2	254 aa		10.14	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	CHST2	Q9Y4C5	530 aa		10.14	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	TMEM120B	A0PK00	339 aa		10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	TRPC5OS	A6NMA1	111 aa		10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	F12	P00748	615 aa	Predicted RBP	10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	IL6	P05231	212 aa		10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	CSF3	P09919	207 aa		10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	NUDT7	P0C024	238 aa		10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	TFPT	P0C1Z6	253 aa		10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	CBL	P22681	906 aa		10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	RPS5	P46782	204 aa	Known RBP	10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	PDLIM4	P50479	330 aa		10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	MAP2K6	P52564	334 aa		10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	SNRPD2	P62316	118 aa	Known RBP	10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	LSM11	P83369	360 aa	Known RBP eCLIP	10.13	□□□□□ -0.79	6e-9	■■□□□ 12.8
CDK5RAP3-223	ENST00000582114	LRRC74A	Q0VAA2	488 aa		10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	LARS2	Q15031	903 aa	Known RBP	10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	SWI5	Q1ZZU3	235 aa		10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	PDCD4	Q53EL6	469 aa	Known RBP	10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	C6orf10	Q5SRN2	563 aa		10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	SLC46A3	Q7Z3Q1	461 aa		10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	MAVS	Q7Z434	540 aa		10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	ABHD12B	Q7Z5M8	362 aa	Predicted RBP	10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	EPHX4	Q8IUS5	362 aa		10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	GLB1L3	Q8NCI6	653 aa	Predicted RBP	10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	TMEM158	Q8WZ71	300 aa		10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	MAL2	Q969L2	176 aa		10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	PIMREG	Q9BSJ6	248 aa		10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	SHARPIN	Q9H0F6	387 aa		10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	CACYBP	Q9HB71	228 aa	Known RBP	10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	CA10	Q9NS85	328 aa		10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	THAP1	Q9NVV9	213 aa		10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	CALML5	Q9NZT1	146 aa		10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	ZNF232	Q9UNY5	417 aa		10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	FKBP7	Q9Y680	259 aa		10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	ARFGEF3	Q5TH69	2177 aa		10.13	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	SLC35F4	A4IF30	521 aa		10.12	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	TMEM229A	B2RXF0	380 aa		10.12	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	LMX1B	O60663	402 aa		10.12	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	SNN	O75324	88 aa	Predicted RBP	10.12	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	AHSA1	O95433	338 aa		10.12	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	CELA3B	P08861	270 aa		10.12	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	OR4A8	P0C604	315 aa		10.12	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	CECR9	P0C854	216 aa		10.12	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	PNMT	P11086	282 aa		10.12	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	IDO1	P14902	403 aa		10.12	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	CALCR	P30988	508 aa		10.12	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	SERPINF1	P36955	418 aa		10.12	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	CLDN17	P56750	224 aa		10.12	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	IL1RL1	Q01638	556 aa		10.12	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	ROR2	Q01974	943 aa	Known RBP	10.12	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	IQCC	Q4KMZ1	466 aa		10.12	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	ZNF311	Q5JNZ3	666 aa		10.12	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	RNF220	Q5VTB9	566 aa		10.12	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	MYPOP	Q86VE0	399 aa	Predicted RBP	10.12	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	PROX1	Q92786	737 aa		10.12	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	BCL2L2	Q92843	193 aa	Predicted RBP	10.12	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	KTI12	Q96EK9	354 aa	Predicted RBP	10.12	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	ITCH	Q96J02	903 aa		10.12	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	FOXN4	Q96NZ1	517 aa		10.12	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	OR52B2	Q96RD2	323 aa		10.12	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	PTDSS2	Q9BVG9	487 aa		10.12	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	SPATA9	Q9BWV2	254 aa		10.12	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	NELFA	Q9H3P2	528 aa		10.12	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	RMND5A	Q9H871	391 aa		10.12	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	RASD1	Q9Y272	281 aa		10.12	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	STAB1	Q9NY15	2570 aa		10.12	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	IGHV4-61	A0A0C4DH41	118 aa		10.11	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114		A0A0G2JPF8	293 aa		10.11	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	LOC100289279	A0A1B0GTE1	492 aa		10.11	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	TMEM247	A6NEH6	219 aa		10.11	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	HNRNPCL2	B2RXH8	293 aa		10.11	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	HNRNPCL3	B7ZW38	293 aa		10.11	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	HNRNPCL1	O60812	293 aa	Known RBP	10.11	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	NPIPB7	O75200	414 aa		10.11	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	SEC14L2	O76054	403 aa		10.11	□□□□□ -0.79
CDK5RAP3-223	ENST00000582114	CRYAA	P02489	173 aa		10.11	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms