RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 UBE2NLQ5JXB2 153 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 RPL13AP3Q6NVV1 102 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 KISS1RQ969F8 398 aaPredicted RBP13.32□□□□□ -0.28
VPS35-210ENST00000568784 PGLYRP3Q96LB9 341 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 KCNE5Q9UJ90 142 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 TEX51A0A1B0GUA7 166 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 RPS15AP62244 130 aaKnown RBP13.32□□□□□ -0.28
VPS35-210ENST00000568784 DUSP8Q13202 625 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 NUDT18Q6ZVK8 323 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 ABHD13Q7L211 337 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 OOSP2Q86WS3 158 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 LSMEM1Q8N8F7 131 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 AHCYL2Q96HN2 611 aaKnown RBP13.32□□□□□ -0.28
VPS35-210ENST00000568784 OR2M4Q96R27 311 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 MENTQ9BUN1 341 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 MED11Q9P086 117 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 DAPP1Q9UN19 280 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 LINC00862A6NCI5 91 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 CTSVO60911 334 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 RNGTTO60942 597 aaKnown RBP13.32□□□□□ -0.28
VPS35-210ENST00000568784 CEACAM5P06731 702 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 SULT1A3P0DMM9 295 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 SULT1A4P0DMN0 295 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 TMIGD3P0DMS9 266 aaPredicted RBP13.32□□□□□ -0.28
VPS35-210ENST00000568784 GRK6P43250 576 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 ZP1P60852 638 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 ACSM1Q08AH1 577 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 FZD5Q13467 585 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 MELKQ14680 651 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 PRAMEF8Q5VWM4 474 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 PRAMEF7Q5VXH5 474 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 DMKNQ6E0U4 476 aaPredicted RBP13.32□□□□□ -0.28
VPS35-210ENST00000568784 TOR1AIP2Q8NFQ8 470 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 UBL7Q96S82 380 aaPredicted RBP13.32□□□□□ -0.28
VPS35-210ENST00000568784 MICU1Q9BPX6 476 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 KXD1Q9BQD3 176 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 INPP5EQ9NRR6 644 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 CDH23Q9H251 3354 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 CT62P0C5K7 136 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 GMFBP60983 142 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 SORDQ00796 357 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 ZIC1Q15915 447 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 GLRX5Q86SX6 157 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 CAMKVQ8NCB2 501 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 ZPLD1Q8TCW7 415 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 FGF13Q92913 245 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 APOOQ9BUR5 198 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 KCNK15Q9H427 330 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 RXFP3Q9NSD7 469 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 hCG_1807616A0A1W2PRN6 198 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 CDK2AP1O14519 115 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 OR6A2O95222 327 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 PLGP00747 810 aaPredicted RBP13.31□□□□□ -0.28
VPS35-210ENST00000568784 UBL4AP11441 157 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 AQP2P41181 271 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 RIN1Q13671 783 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 CLLU1Q5K131 121 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 RNF113BQ8IZP6 322 aaKnown RBP13.31□□□□□ -0.28
VPS35-210ENST00000568784 BMPERQ8N8U9 685 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 ZNF563Q8TA94 476 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 SLC25A36Q96CQ1 311 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 ELF4Q99607 663 aaPredicted RBP13.31□□□□□ -0.28
VPS35-210ENST00000568784 IFITM5A6NNB3 132 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 H0YGG7 62 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 ECDO95905 644 aaPredicted RBP13.31□□□□□ -0.28
VPS35-210ENST00000568784 FAUP35544 74 aaKnown RBP13.31□□□□□ -0.28
VPS35-210ENST00000568784 ARF3P61204 181 aaPredicted RBP13.31□□□□□ -0.28
VPS35-210ENST00000568784 EEF1A1P68104 462 aaKnown RBP13.31□□□□□ -0.28
VPS35-210ENST00000568784 TAGLNQ01995 201 aaKnown RBP13.31□□□□□ -0.28
VPS35-210ENST00000568784 GUCA2AQ02747 115 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 BIKQ13323 160 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 RPL22L1Q6P5R6 122 aaKnown RBP13.31□□□□□ -0.28
VPS35-210ENST00000568784 NDUFAF7Q7L592 441 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 HDDC2Q7Z4H3 204 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 OR11G2Q8NGC1 345 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 OR51D1Q8NGF3 324 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 DUSP19Q8WTR2 217 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 ST8SIA4Q92187 359 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 PPA2Q9H2U2 334 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 POMT2Q9UKY4 750 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 TBX21Q9UL17 535 aa13.31□□□□□ -0.28
VPS35-210ENST00000568784 APODP05090 189 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 OR2T7P0C7T2 308 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 AGBL4Q5VU57 503 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 ARMC6Q6NXE6 501 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 PRSS58Q8IYP2 241 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 OR2T27Q8NH04 317 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 OR5AK2Q8NH90 309 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 PHOSPHO1Q8TCT1 267 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 TTC9Q92623 222 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 C1QTNF7Q9BXJ2 289 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 HRASLS2Q9NWW9 162 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 LAMP5Q9UJQ1 280 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 ARHGEF17Q96PE2 2063 aaPredicted RBP13.3□□□□□ -0.28
VPS35-210ENST00000568784 CARNS1A5YM72 827 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 PYCARD-AS1I3L0S3 204 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 SHOXO15266 292 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 ZFPL1O95159 310 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 ERGP11308 486 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 APEHP13798 732 aaKnown RBP13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms