RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 PAPOLGQ9BWT3 736 aaKnown RBP3.09□□□□□ -1.91
CD44-235ENST00000532339 WWP1Q9H0M0 922 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 DCTPP1Q9H773 170 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 FAM120CQ9NX05 1096 aaKnown RBP3.09□□□□□ -1.91
CD44-235ENST00000532339 KLHL21Q9UJP4 597 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 MRTO4Q9UKD2 239 aaKnown RBP3.09□□□□□ -1.91
CD44-235ENST00000532339 DIMT1Q9UNQ2 313 aaKnown RBP3.09□□□□□ -1.91
CD44-235ENST00000532339 GOLGA6L7A0A1B0GV03 622 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 TUBAL3A6NHL2 446 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 C9J4A7 227 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 NPIPA5E9PKD4 350 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 H0YCG3 227 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 K7EPI3 171 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 UBFD1O14562 309 aaKnown RBP3.08□□□□□ -1.92
CD44-235ENST00000532339 CCSO14618 274 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 SSX5O60225 188 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 HOXC4P09017 264 aaPredicted RBP3.08□□□□□ -1.92
CD44-235ENST00000532339 ZCCHC18P0CG32 403 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 SELEP16581 610 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 ZNF30P17039 623 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 NELFEP18615 380 aaKnown RBP3.08□□□□□ -1.92
CD44-235ENST00000532339 FUT1P19526 365 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 GIFP27352 417 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 RORAP35398 523 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 OPRL1P41146 370 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 ZFP36L2P47974 494 aaKnown RBP3.08□□□□□ -1.92
CD44-235ENST00000532339 NUP107P57740 925 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 RPS24P62847 133 aaKnown RBP3.08□□□□□ -1.92
CD44-235ENST00000532339 GPAT3Q53EU6 434 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 FAM120AOSQ5T036 256 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 IRGCQ6NXR0 463 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 UNC5DQ6UXZ4 953 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 BNIPLQ7Z465 357 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 C17orf64Q86WR6 236 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 SLC13A5Q86YT5 568 aaPredicted RBP3.08□□□□□ -1.92
CD44-235ENST00000532339 PARP8Q8N3A8 854 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 RNF148Q8N7C7 305 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 ARIH2OSQ8N7S6 290 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 MINDY2Q8NBR6 621 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 OR5M9Q8NGP3 310 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 SLC37A2Q8TED4 501 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 P3H4Q92791 437 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 ZNF274Q96GC6 653 aaPredicted RBP3.08□□□□□ -1.92
CD44-235ENST00000532339 TGM7Q96PF1 710 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 OVOL2Q9BRP0 275 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 DGCR6LQ9BY27 220 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 HOXD1Q9GZZ0 328 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 ATG10Q9H0Y0 220 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 SLC26A1Q9H2B4 701 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 MED17Q9NVC6 651 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 CNOT2Q9NZN8 540 aaKnown RBP3.08□□□□□ -1.92
CD44-235ENST00000532339 VPS54Q9P1Q0 977 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 COPS7AQ9UBW8 275 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 IL20RAQ9UHF4 553 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 TP53TG3Q9ULZ0 132 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 NPIPA1Q9UND3 350 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 AURKCQ9UQB9 309 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 PPP1R3CQ9UQK1 317 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 HS3ST2Q9Y278 367 aa3.08□□□□□ -1.92
CD44-235ENST00000532339 CR1P17927 2039 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 LCE6AA0A183 80 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 USP27XA6NNY8 438 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 NPIPB9F8W1W9 429 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 G3V2L1 256 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 GPRIN2O60269 458 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 AKR7A3O95154 331 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 SYNGR4O95473 234 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 JCHAINP01591 159 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 FAM200BP0CF97 657 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 ZSCAN5DPP0CG00 497 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 FOLR1P15328 257 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 IGFBP5P24593 272 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 AK4P27144 223 aaPredicted RBP3.07□□□□□ -1.92
CD44-235ENST00000532339 GPR183P32249 361 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 FHITP49789 147 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 ATP5J2P56134 94 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 MLF1P58340 268 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 SLC26A5P58743 744 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 FUT7Q11130 342 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 TMEM249Q2WGJ8 235 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 CMPK2Q5EBM0 449 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 RAET1GQ6H3X3 334 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 GALNT17Q6IS24 598 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 FAM159AQ6UWV7 190 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 CDHR3Q6ZTQ4 885 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 BLIDQ8IZY5 108 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 OR2Y1Q8NGV0 311 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 OR2L2Q8NH16 312 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 CXorf40AQ8TE69 158 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 LIPHQ8WWY8 451 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 GTF3AQ92664 365 aaKnown RBP3.07□□□□□ -1.92
CD44-235ENST00000532339 SLCO2A1Q92959 643 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 RNASE6Q93091 150 aaKnown RBP3.07□□□□□ -1.92
CD44-235ENST00000532339 MRPL24Q96A35 216 aaKnown RBP3.07□□□□□ -1.92
CD44-235ENST00000532339 ZNF514Q96K75 400 aaPredicted RBP3.07□□□□□ -1.92
CD44-235ENST00000532339 C16orf45Q96MC5 204 aaPredicted RBP3.07□□□□□ -1.92
CD44-235ENST00000532339 RAB40CQ96S21 281 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 CBWD1Q9BRT8 395 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 TIPINQ9BVW5 301 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 RAB17Q9H0T7 212 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms