RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 MFSD8Q8NHS3 518 aa8.48□□□□□ -1.05
VPS52-216ENST00000471309 SLC25A43Q8WUT9 341 aaPredicted RBP8.48□□□□□ -1.05
VPS52-216ENST00000471309 THAP4Q8WY91 577 aa8.48□□□□□ -1.05
VPS52-216ENST00000471309 HIST1H2ACQ93077 130 aa8.48□□□□□ -1.05
VPS52-216ENST00000471309 LGALS12Q96DT0 336 aa8.48□□□□□ -1.05
VPS52-216ENST00000471309 RNFT2Q96EX2 444 aa8.48□□□□□ -1.05
VPS52-216ENST00000471309 CRELD1Q96HD1 420 aa8.48□□□□□ -1.05
VPS52-216ENST00000471309 DOK1Q99704 481 aa8.48□□□□□ -1.05
VPS52-216ENST00000471309 NPAS1Q99742 590 aa8.48□□□□□ -1.05
VPS52-216ENST00000471309 KATNB1Q9BVA0 655 aa8.48□□□□□ -1.05
VPS52-216ENST00000471309 JAM3Q9BX67 310 aa8.48□□□□□ -1.05
VPS52-216ENST00000471309 ASPNQ9BXN1 380 aa8.48□□□□□ -1.05
VPS52-216ENST00000471309 POTEKPQ9BYX7 375 aa8.48□□□□□ -1.05
VPS52-216ENST00000471309 OR11A1Q9GZK7 315 aa8.48□□□□□ -1.05
VPS52-216ENST00000471309 MRPL39Q9NYK5 338 aaKnown RBP8.48□□□□□ -1.05
VPS52-216ENST00000471309 H2AFY2Q9P0M6 372 aaPredicted RBP8.48□□□□□ -1.05
VPS52-216ENST00000471309 WARS2Q9UGM6 360 aaKnown RBP8.48□□□□□ -1.05
VPS52-216ENST00000471309 ADAM18Q9Y3Q7 739 aa8.48□□□□□ -1.05
VPS52-216ENST00000471309 CORINQ9Y5Q5 1042 aa8.48□□□□□ -1.05
VPS52-216ENST00000471309 IER3IP1Q9Y5U9 82 aa8.48□□□□□ -1.05
VPS52-216ENST00000471309 PTPRZ1P23471 2315 aaPredicted RBP8.47□□□□□ -1.05
VPS52-216ENST00000471309 FAM183AA6NL82 134 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 BLOC1S5-TXNDC5H3BN57 136 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 GFRA3O60609 400 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 NOL3O60936 208 aaKnown RBP8.47□□□□□ -1.05
VPS52-216ENST00000471309 TRMUO75648 421 aaKnown RBP8.47□□□□□ -1.05
VPS52-216ENST00000471309 CBR3O75828 277 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 PTHP01270 115 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 IGHMP01871 453 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 IGHA1P01876 353 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 LCKP06239 509 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 ADRA2AP08913 450 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 HIST1H1CP16403 213 aaKnown RBP8.47□□□□□ -1.05
VPS52-216ENST00000471309 ZNF17P17021 662 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 SLC2A5P22732 501 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 PSMB9P28065 219 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 GRPRP30550 384 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 SDHAP31040 664 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 CLK1P49759 484 aaKnown RBP8.47□□□□□ -1.05
VPS52-216ENST00000471309 ST13P50502 369 aaKnown RBP8.47□□□□□ -1.05
VPS52-216ENST00000471309 RRADP55042 308 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 TMBIM6P55061 237 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 DSCR4P56555 118 aaPredicted RBP8.47□□□□□ -1.05
VPS52-216ENST00000471309 SOX8P57073 446 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 KHDRBS1Q07666 443 aaKnown RBP eCLIP8.47□□□□□ -1.05
VPS52-216ENST00000471309 GPR107Q5VW38 600 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 SLC6A19Q695T7 634 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 GPR139Q6DWJ6 353 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 B3GNT6Q6ZMB0 384 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 MEPCEQ7L2J0 689 aaKnown RBP8.47□□□□□ -1.05
VPS52-216ENST00000471309 ZNF227Q86WZ6 799 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 ALDH16A1Q8IZ83 802 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 FAM98AQ8NCA5 519 aaKnown RBP8.47□□□□□ -1.05
VPS52-216ENST00000471309 SLC37A3Q8NCC5 494 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 LSM14AQ8ND56 463 aaKnown RBP8.47□□□□□ -1.05
VPS52-216ENST00000471309 OR52E2Q8NGJ4 325 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 RAB2BQ8WUD1 216 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 KISS1RQ969F8 398 aaPredicted RBP8.47□□□□□ -1.05
VPS52-216ENST00000471309 ISOC1Q96CN7 298 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 NXPE2Q96DL1 559 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 UTP23Q9BRU9 249 aaKnown RBP8.47□□□□□ -1.05
VPS52-216ENST00000471309 MND1Q9BWT6 205 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 HCAR1Q9BXC0 346 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 RACGAP1Q9H0H5 632 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 TIMMDC1Q9NPL8 285 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 KLHL1Q9NR64 748 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 ALKBH4Q9NXW9 302 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 TAS2R16Q9NYV7 291 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 STMN3Q9NZ72 180 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 ERGIC3Q9Y282 383 aa8.47□□□□□ -1.05
VPS52-216ENST00000471309 EXOGQ9Y2C4 368 aaKnown RBP8.47□□□□□ -1.05
VPS52-216ENST00000471309 LSM2Q9Y333 95 aaKnown RBP8.47□□□□□ -1.05
VPS52-216ENST00000471309 EXOSC1Q9Y3B2 195 aaKnown RBP8.47□□□□□ -1.05
VPS52-216ENST00000471309 TEX13CA0A0J9YWL9 993 aa8.46□□□□□ -1.06
VPS52-216ENST00000471309 TMEM129A0AVI4 362 aa8.46□□□□□ -1.06
VPS52-216ENST00000471309 CCDC182A6NF36 153 aa8.46□□□□□ -1.06
VPS52-216ENST00000471309 NPIPB13A6NJU9 1138 aa8.46□□□□□ -1.06
VPS52-216ENST00000471309 LRRC3CA6NJW4 275 aa8.46□□□□□ -1.06
VPS52-216ENST00000471309 LIPT2A6NK58 231 aa8.46□□□□□ -1.06
VPS52-216ENST00000471309 SHISA8B8ZZ34 492 aa8.46□□□□□ -1.06
VPS52-216ENST00000471309 NPIPB4C9JG80 1138 aa8.46□□□□□ -1.06
VPS52-216ENST00000471309 G3V3Y1 287 aa8.46□□□□□ -1.06
VPS52-216ENST00000471309 M0R082 166 aa8.46□□□□□ -1.06
VPS52-216ENST00000471309 PLPP3O14495 311 aa8.46□□□□□ -1.06
VPS52-216ENST00000471309 MYL12BO14950 172 aa8.46□□□□□ -1.06
VPS52-216ENST00000471309 MYL12AP19105 171 aa8.46□□□□□ -1.06
VPS52-216ENST00000471309 IL11P20809 199 aa8.46□□□□□ -1.06
VPS52-216ENST00000471309 DPP4P27487 766 aa8.46□□□□□ -1.06
VPS52-216ENST00000471309 GTF2E2P29084 291 aaKnown RBP8.46□□□□□ -1.06
VPS52-216ENST00000471309 SRD5A2P31213 254 aa8.46□□□□□ -1.06
VPS52-216ENST00000471309 DNASE1L1P49184 302 aa8.46□□□□□ -1.06
VPS52-216ENST00000471309 CTXN1P60606 82 aa8.46□□□□□ -1.06
VPS52-216ENST00000471309 ERVK-25P63136 954 aa8.46□□□□□ -1.06
VPS52-216ENST00000471309 OC90Q02509 493 aaPredicted RBP8.46□□□□□ -1.06
VPS52-216ENST00000471309 POU4F2Q12837 409 aa8.46□□□□□ -1.06
VPS52-216ENST00000471309 KRR1Q13601 381 aaKnown RBP8.46□□□□□ -1.06
VPS52-216ENST00000471309 GGTLC2Q14390 218 aa8.46□□□□□ -1.06
VPS52-216ENST00000471309 TIGD6Q17RP2 521 aa8.46□□□□□ -1.06
VPS52-216ENST00000471309 GLYR1Q49A26 553 aaPredicted RBP8.46□□□□□ -1.06
VPS52-216ENST00000471309 CRTC2Q53ET0 693 aaPredicted RBP8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms