RNA–Protein interactions for RNA: ENST00000409747.5

CBX3-203, Transcript of chromobox 3, humanhuman

TSL 1 (best) BASIC

Gene CBX3, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-203ENST00000409747 C7orf26Q96N11 449 aa12.91□□□□□ -0.34
CBX3-203ENST00000409747 ZNF317Q96PQ6 595 aaPredicted RBP12.91□□□□□ -0.34
CBX3-203ENST00000409747 PAIP1Q9H074 479 aaKnown RBP12.91□□□□□ -0.34
CBX3-203ENST00000409747 TCF7L2Q9NQB0 619 aa12.91□□□□□ -0.34
CBX3-203ENST00000409747 TMEM45AQ9NWC5 275 aa12.91□□□□□ -0.34
CBX3-203ENST00000409747 RPS6KB2Q9UBS0 482 aa12.91□□□□□ -0.34
CBX3-203ENST00000409747 CR1P17927 2039 aa12.91□□□□□ -0.34
CBX3-203ENST00000409747 NPIPB7O75200 414 aa12.91□□□□□ -0.34
CBX3-203ENST00000409747 PRG2P13727 222 aa12.91□□□□□ -0.34
CBX3-203ENST00000409747 CDH2P19022 906 aaPredicted RBP12.91□□□□□ -0.34
CBX3-203ENST00000409747 PTNP21246 168 aa12.91□□□□□ -0.34
CBX3-203ENST00000409747 PPIBP23284 216 aaKnown RBP12.91□□□□□ -0.34
CBX3-203ENST00000409747 APOBEC3AP31941 199 aaPredicted RBP12.91□□□□□ -0.34
CBX3-203ENST00000409747 SLC25A3Q00325 362 aa12.91□□□□□ -0.34
CBX3-203ENST00000409747 SLC2A7Q6PXP3 512 aa12.91□□□□□ -0.34
CBX3-203ENST00000409747 C5orf46Q6UWT4 87 aa12.91□□□□□ -0.34
CBX3-203ENST00000409747 CREB3L2Q70SY1 520 aa12.91□□□□□ -0.34
CBX3-203ENST00000409747 SPATA5L1Q9BVQ7 753 aa12.91□□□□□ -0.34
CBX3-203ENST00000409747 C12orf10Q9HB07 376 aa12.91□□□□□ -0.34
CBX3-203ENST00000409747 PMF1-BGLAPU3KQ54 211 aa12.91□□□□□ -0.34
CBX3-203ENST00000409747 PLCE1Q9P212 2302 aa12.9□□□□□ -0.34
CBX3-203ENST00000409747 ELOA3DA6NLF2 546 aaPredicted RBP12.9□□□□□ -0.34
CBX3-203ENST00000409747 CSF3P09919 207 aa12.9□□□□□ -0.34
CBX3-203ENST00000409747 ETS2P15036 469 aa12.9□□□□□ -0.34
CBX3-203ENST00000409747 PRKAR1BP31321 381 aa12.9□□□□□ -0.34
CBX3-203ENST00000409747 P2RY4P51582 365 aa12.9□□□□□ -0.34
CBX3-203ENST00000409747 SH3BGRP55822 239 aaPredicted RBP12.9□□□□□ -0.34
CBX3-203ENST00000409747 ELOA3BQ3SY89 546 aa12.9□□□□□ -0.34
CBX3-203ENST00000409747 BEND6Q5SZJ8 279 aaPredicted RBP12.9□□□□□ -0.34
CBX3-203ENST00000409747 AGBL2Q5U5Z8 902 aa12.9□□□□□ -0.34
CBX3-203ENST00000409747 KRT73Q86Y46 540 aa12.9□□□□□ -0.34
CBX3-203ENST00000409747 ELOA3Q8NG57 546 aa12.9□□□□□ -0.34
CBX3-203ENST00000409747 LRRC8CQ8TDW0 803 aa12.9□□□□□ -0.34
CBX3-203ENST00000409747 MAL2Q969L2 176 aa12.9□□□□□ -0.34
CBX3-203ENST00000409747 KCNS3Q9BQ31 491 aa12.9□□□□□ -0.34
CBX3-203ENST00000409747 CHST2Q9Y4C5 530 aa12.9□□□□□ -0.34
CBX3-203ENST00000409747 CHD3Q12873 2000 aaKnown RBP12.9□□□□□ -0.35
CBX3-203ENST00000409747 KIAA1324LA8MWY0 1029 aaPredicted RBP12.89□□□□□ -0.35
CBX3-203ENST00000409747 NUDT7P0C024 238 aa12.89□□□□□ -0.35
CBX3-203ENST00000409747 SLC25A16P16260 332 aa12.89□□□□□ -0.35
CBX3-203ENST00000409747 SELENOPP49908 381 aa12.89□□□□□ -0.35
CBX3-203ENST00000409747 UBE2NP61088 152 aaKnown RBP12.89□□□□□ -0.35
CBX3-203ENST00000409747 TBRG1Q3YBR2 411 aa12.89□□□□□ -0.35
CBX3-203ENST00000409747 HIKESHIQ53FT3 197 aa12.89□□□□□ -0.35
CBX3-203ENST00000409747 LRIF1Q5T3J3 769 aa12.89□□□□□ -0.35
CBX3-203ENST00000409747 GCNT6Q5T4J0 391 aa12.89□□□□□ -0.35
CBX3-203ENST00000409747 NIPAL3Q6P499 406 aa12.89□□□□□ -0.35
CBX3-203ENST00000409747 C6orf89Q6UWU4 347 aa12.89□□□□□ -0.35
CBX3-203ENST00000409747 OR10H5Q8NGA6 315 aa12.89□□□□□ -0.35
CBX3-203ENST00000409747 OR1K1Q8NGR3 316 aa12.89□□□□□ -0.35
CBX3-203ENST00000409747 ALKBH3Q96Q83 286 aaPredicted RBP12.89□□□□□ -0.35
CBX3-203ENST00000409747 LINC00470Q9BZP3 86 aa12.89□□□□□ -0.35
CBX3-203ENST00000409747 CORO2BQ9UQ03 480 aa12.89□□□□□ -0.35
CBX3-203ENST00000409747 RCE1Q9Y256 329 aa12.89□□□□□ -0.35
CBX3-203ENST00000409747 IGHV4-30-2A0A087WSY4 118 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 FTCDNL1E5RQL4 147 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 ATP6V1G2-DDX39BF2Z307 99 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 OR2T1O43869 369 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 PNMTP11086 282 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 ZNF43P17038 809 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 HOXB9P17482 250 aaPredicted RBP12.88□□□□□ -0.35
CBX3-203ENST00000409747 RPS5P46782 204 aaKnown RBP12.88□□□□□ -0.35
CBX3-203ENST00000409747 NCALDP61601 193 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 HMBOX1Q6NT76 420 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 BLOC1S3Q6QNY0 202 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 LSMEM1Q8N8F7 131 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 ANKK1Q8NFD2 765 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 MAGEE2Q8TD90 523 aaPredicted RBP12.88□□□□□ -0.35
CBX3-203ENST00000409747 DNAJA4Q8WW22 397 aaPredicted RBP12.88□□□□□ -0.35
CBX3-203ENST00000409747 SLC38A4Q969I6 547 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 SLC25A36Q96CQ1 311 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 SPDL1Q96EA4 605 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 SLC38A2Q96QD8 506 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 CCDC28BQ9BUN5 200 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 KATNB1Q9BVA0 655 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 YAE1D1Q9NRH1 226 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 MOKQ9UQ07 419 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 ARPC4-TTLL3A0A0A6YYG9 625 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 NR5A2O00482 541 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 AIM2O14862 343 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 AKAP8O43823 692 aaKnown RBP12.88□□□□□ -0.35
CBX3-203ENST00000409747 LGI1O95970 557 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 ARAFP10398 606 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 HOXB1P14653 301 aaPredicted RBP12.88□□□□□ -0.35
CBX3-203ENST00000409747 EFNA4P52798 201 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 C3orf36Q3SXR2 165 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 REEP3Q6NUK4 255 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 ANKRD16Q6P6B7 361 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 EPHX4Q8IUS5 362 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 BHLHE22Q8NFJ8 381 aaPredicted RBP12.88□□□□□ -0.35
CBX3-203ENST00000409747 FAM168AQ92567 244 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 PTDSS2Q9BVG9 487 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 SELENONQ9NZV5 590 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 CCDC167Q9P0B6 97 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 ADAM21Q9UKJ8 722 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 FKBP7Q9Y680 259 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 GMEB1Q9Y692 573 aa12.88□□□□□ -0.35
CBX3-203ENST00000409747 HEATR1Q9H583 2144 aaKnown RBP12.87□□□□□ -0.35
CBX3-203ENST00000409747 PRORSD1PA6NEY8 169 aa12.87□□□□□ -0.35
CBX3-203ENST00000409747 FZD7O75084 574 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms