RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 TNXAQ16473 311 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 C5orf47Q569G3 176 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 FGD3Q5JSP0 725 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 UTF1Q5T230 341 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 GFRALQ6UXV0 394 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 LRRC31Q6UY01 552 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 TMPRSS11AQ6ZMR5 421 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 MBOAT1Q6ZNC8 495 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 SLC51BQ86UW2 128 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 TMEM219Q86XT9 240 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 DND1Q8IYX4 353 aaKnown RBP3.53□□□□□ -1.85
HMGB1-204ENST00000399489 JAGN1Q8N5M9 183 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 TRAM1L1Q8N609 369 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 TMEM239Q8WW34 195 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 SORCS1Q8WY21 1168 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 LZICQ8WZA0 190 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 DLX4Q92988 240 aaPredicted RBP3.53□□□□□ -1.85
HMGB1-204ENST00000399489 MYDGFQ969H8 173 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 UBE2E3Q969T4 207 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 TBRG4Q969Z0 631 aaKnown RBP eCLIP3.53□□□□□ -1.85
HMGB1-204ENST00000399489 PPP1R36Q96LQ0 422 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 NAT9Q9BTE0 207 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 CCDC28BQ9BUN5 200 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 DGCR6LQ9BY27 220 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 PARVBQ9HBI1 364 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 C3orf14Q9HBI5 128 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 SLC38A10Q9HBR0 1119 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP3.53□□□□□ -1.852e-6■□□□□ 10.8
HMGB1-204ENST00000399489 TREX1Q9NSU2 369 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 IMP3Q9NV31 184 aaKnown RBP3.53□□□□□ -1.85
HMGB1-204ENST00000399489 ELOVL2Q9NXB9 296 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 IL36RNQ9UBH0 155 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 KIF25Q9UIL4 384 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 SLC7A7Q9UM01 511 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 SCML2Q9UQR0 700 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 TSSC4Q9Y5U2 329 aaPredicted RBP3.53□□□□□ -1.85
HMGB1-204ENST00000399489 ABCA8O94911 1581 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 MAP3K15Q6ZN16 1313 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 A0A0A6YYD4 124 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 NSG1A0A0A6YYJ2 146 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 TRBV4-1A0A0J9YWV2 114 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 A0A1W2PRD5 423 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 ARGFXA6NJG6 315 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 SNURFLB1AK76 121 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 ZNF814B7Z6K7 855 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 E7ESA3 106 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 B4GALT5O43286 388 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 FARS2O95363 451 aaKnown RBP3.52□□□□□ -1.85
HMGB1-204ENST00000399489 APOEP02649 317 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 NGFRP08138 427 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 SERPINA6P08185 405 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 TRIM49P0CI25 452 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 TRIM49CP0CI26 452 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 IGHV4-30-4P0DP06 118 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 RAB4AP20338 218 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 NPR2P20594 1047 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 BGNP21810 368 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 GIFP27352 417 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 TEAD1P28347 426 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 UGT2B10P36537 528 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 MAP3K8P41279 467 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 NSG1P42857 185 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 CSNK1DP48730 415 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 RPS6P62753 249 aaKnown RBP3.52□□□□□ -1.85
HMGB1-204ENST00000399489 REEP5Q00765 189 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 DUSP5Q16690 384 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 SLC22A6Q4U2R8 563 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 SOHLH1Q5JUK2 328 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 SPANXN4Q5MJ08 99 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 TRNP1Q6NT89 227 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 TTC37Q6PGP7 1564 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 ATRAIDQ6UW56 229 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 PLEKHG7Q6ZR37 379 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 FCRLAQ7L513 359 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 GVQW1Q8N7I0 195 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 TCEANCQ8N8B7 351 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 TTC29Q8NA56 475 aaPredicted RBP3.52□□□□□ -1.85
HMGB1-204ENST00000399489 CATSPER1Q8NEC5 780 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 OR2T12Q8NG77 320 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 OR4D9Q8NGE8 314 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 ACOT11Q8WXI4 607 aaPredicted RBP3.52□□□□□ -1.85
HMGB1-204ENST00000399489 C9orf72Q96LT7 481 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 ZNF641Q96N77 438 aaPredicted RBP3.52□□□□□ -1.85
HMGB1-204ENST00000399489 IL12RB2Q99665 862 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 NIPSNAP3BQ9BS92 247 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 UCK2Q9BZX2 261 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 SRRQ9GZT4 340 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 GBA3Q9H227 469 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 SLC38A1Q9H2H9 487 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 WDR55Q9H6Y2 383 aaPredicted RBP3.52□□□□□ -1.85
HMGB1-204ENST00000399489 NIPAL2Q9H841 368 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 KRCC1Q9NPI7 259 aaPredicted RBP3.52□□□□□ -1.85
HMGB1-204ENST00000399489 C12orf4Q9NQ89 552 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 RRAGDQ9NQL2 400 aaPredicted RBP3.52□□□□□ -1.85
HMGB1-204ENST00000399489 ZC4H2Q9NQZ6 224 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 NECAP2Q9NVZ3 263 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 BFARQ9NZS9 450 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 GALPQ9UBC7 116 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 CLEC2DQ9UHP7 191 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 PDE10AQ9Y233 779 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms