RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 CD3DP04234 171 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 FBXO45P0C2W1 286 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 PPT1P50897 306 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 METAP1P53582 386 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 HABP2Q14520 560 aaPredicted RBP12.38□□□□□ -0.43
SKA3-201ENST00000298260 DECR1Q16698 335 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 GXYLT1Q4G148 440 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 HENMT1Q5T8I9 393 aaKnown RBP12.38□□□□□ -0.43
SKA3-201ENST00000298260 OLFML2AQ68BL7 652 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 LHX8Q68G74 356 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 ASTLQ6HA08 431 aaPredicted RBP12.38□□□□□ -0.43
SKA3-201ENST00000298260 C5orf46Q6UWT4 87 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 TMEM150AQ86TG1 271 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 BEST3Q8N1M1 668 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 SLC16A11Q8NCK7 471 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 OR9A2Q8NGT5 310 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 OR6S1Q8NH40 331 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 OR4K13Q8NH42 304 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 SNX33Q8WV41 574 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 GLYATL1Q969I3 302 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 COL26A1Q96A83 441 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 SMIM19Q96E16 107 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 WDR34Q96EX3 536 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 ARHGDIGQ99819 225 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 RSRP1Q9BUV0 290 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 JAM3Q9BX67 310 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 AICDAQ9GZX7 198 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 MRPS30Q9NP92 439 aaKnown RBP12.38□□□□□ -0.43
SKA3-201ENST00000298260 NOSIPQ9Y314 301 aaKnown RBP12.38□□□□□ -0.43
SKA3-201ENST00000298260 A0A1B0GVT2 93 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 NAP1L6A6NFF2 107 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 FAM25EA8MYX2 175 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 LY86O95711 162 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 CSN2P05814 226 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 ST6GAL1P15907 406 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 MGMTP16455 207 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 SSR2P43308 183 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 TAS2R38P59533 333 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 SIRPAP78324 504 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 TEAD2Q15562 447 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 TMEM44Q2T9K0 475 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 SLC24A5Q71RS6 500 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 CD180Q99467 661 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 POFUT1Q9H488 388 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 BCL2L10Q9HD36 194 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 AHSPQ9NZD4 102 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 POM121BA6NF01 834 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 RFPL4AA6NLU0 287 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 C4orf47A7E2U8 309 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 RFPL4AL1F8VTS6 287 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 LEFTY1O75610 366 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 MAS1P04201 325 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 ANXA2P07355 339 aaKnown RBP12.38□□□□□ -0.43
SKA3-201ENST00000298260 GTF2F2P13984 249 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 FRKP42685 505 aaPredicted RBP12.38□□□□□ -0.43
SKA3-201ENST00000298260 MAPK8P45983 427 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 PRLHRP49683 370 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 ARFIP1P53367 373 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 PNLIPRP2P54317 469 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 NANOS3P60323 173 aaKnown RBP12.38□□□□□ -0.43
SKA3-201ENST00000298260 NDUFAF6Q330K2 333 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 HS6ST2Q96MM7 605 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 CAMK1GQ96NX5 476 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 WDR77Q9BQA1 342 aaPredicted RBP12.38□□□□□ -0.43
SKA3-201ENST00000298260 RNF208Q9H0X6 261 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 SLITRK2Q9H156 845 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 CLDND1Q9NY35 253 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 ZNF629Q9UEG4 869 aaPredicted RBP12.38□□□□□ -0.43
SKA3-201ENST00000298260 REV3LO60673 3130 aa12.37□□□□□ -0.43
SKA3-201ENST00000298260 A0A1W2PQ45 241 aaPredicted RBP12.37□□□□□ -0.43
SKA3-201ENST00000298260 KANTRA0A1W2PQU2 76 aa12.37□□□□□ -0.43
SKA3-201ENST00000298260 A0A1W2PQY0 241 aa12.37□□□□□ -0.43
SKA3-201ENST00000298260 SLC22A31A6NKX4 558 aa12.37□□□□□ -0.43
SKA3-201ENST00000298260 EFCAB7A8K855 629 aa12.37□□□□□ -0.43
SKA3-201ENST00000298260 PRR32B1ATL7 298 aa12.37□□□□□ -0.43
SKA3-201ENST00000298260 TYRP1P17643 537 aa12.37□□□□□ -0.43
SKA3-201ENST00000298260 ADRA2CP18825 462 aa12.37□□□□□ -0.43
SKA3-201ENST00000298260 ARSIQ5FYB1 569 aa12.37□□□□□ -0.43
SKA3-201ENST00000298260 ACER2Q5QJU3 275 aa12.37□□□□□ -0.43
SKA3-201ENST00000298260 OTPQ5XKR4 325 aa12.37□□□□□ -0.43
SKA3-201ENST00000298260 GLB1L2Q8IW92 636 aa12.37□□□□□ -0.43
SKA3-201ENST00000298260 SPAG16Q8N0X2 631 aa12.37□□□□□ -0.43
SKA3-201ENST00000298260 SHISA5Q8N114 240 aa12.37□□□□□ -0.43
SKA3-201ENST00000298260 GRHL3Q8TE85 626 aa12.37□□□□□ -0.43
SKA3-201ENST00000298260 RGP1Q92546 391 aaPredicted RBP12.37□□□□□ -0.43
SKA3-201ENST00000298260 PRSS27Q9BQR3 290 aa12.37□□□□□ -0.43
SKA3-201ENST00000298260 OR5H14A6NHG9 310 aa12.37□□□□□ -0.43
SKA3-201ENST00000298260 F5H0A9 414 aaPredicted RBP12.37□□□□□ -0.43
SKA3-201ENST00000298260 TMEM189-UBE2V1I3L0A0 370 aa12.37□□□□□ -0.43
SKA3-201ENST00000298260 M0QYG6 137 aa12.37□□□□□ -0.43
SKA3-201ENST00000298260 NDUFS4O43181 175 aa12.37□□□□□ -0.43
SKA3-201ENST00000298260 UBBP0CG47 229 aa12.37□□□□□ -0.43
SKA3-201ENST00000298260 UBCP0CG48 685 aaKnown RBP12.37□□□□□ -0.43
SKA3-201ENST00000298260 APEHP13798 732 aaKnown RBP12.37□□□□□ -0.43
SKA3-201ENST00000298260 HTR2AP28223 471 aa12.37□□□□□ -0.43
SKA3-201ENST00000298260 RPS27AP62979 156 aaKnown RBP12.37□□□□□ -0.43
SKA3-201ENST00000298260 UBA52P62987 128 aaKnown RBP12.37□□□□□ -0.43
SKA3-201ENST00000298260 RAB33AQ14088 237 aa12.37□□□□□ -0.43
SKA3-201ENST00000298260 MICBQ29980 383 aa12.37□□□□□ -0.43
SKA3-201ENST00000298260 DPPA4Q7L190 304 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms