RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 TPBGQ13641 420 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 YIF1BQ5BJH7 314 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 UBE2NLQ5JXB2 153 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 PDXPQ96GD0 296 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 FOXN4Q96NZ1 517 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 VRK1Q99986 396 aaPredicted RBP14.23□□□□□ -0.13
SHH-201ENST00000297261 HINT3Q9NQE9 182 aaKnown RBP14.23□□□□□ -0.13
SHH-201ENST00000297261 INPP5EQ9NRR6 644 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 ACSS1Q9NUB1 689 aaPredicted RBP14.23□□□□□ -0.13
SHH-201ENST00000297261 NPFFR2Q9Y5X5 522 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 A0A0D9SG52 128 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 SLC2A10O95528 541 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 OR1Q1Q15612 314 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 C8orf82Q6P1X6 216 aaPredicted RBP14.23□□□□□ -0.13
SHH-201ENST00000297261 TECPR1Q7Z6L1 1165 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 NKAIN4Q8IVV8 208 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 FGF14Q92915 247 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 MRGPRX3Q96LB0 322 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 RBP7Q96R05 134 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 CHST8Q9H2A9 424 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 C17orf113A0A1B0GUU1 675 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 EIF4EP06730 217 aaKnown RBP14.23□□□□□ -0.13
SHH-201ENST00000297261 HNRNPA2B1P22626 353 aaKnown RBP14.23□□□□□ -0.13
SHH-201ENST00000297261 PTBP1P26599 531 aaKnown RBP eCLIP14.23□□□□□ -0.13
SHH-201ENST00000297261 TEKQ02763 1124 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 FAM189A2Q15884 450 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 TMEM52BQ4KMG9 183 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 H3F3CQ6NXT2 135 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 LCTLQ6UWM7 567 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 PRSS42Q7Z5A4 293 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 GCDHQ92947 438 aaPredicted RBP14.23□□□□□ -0.13
SHH-201ENST00000297261 RADILQ96JH8 1075 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 TNFRSF13CQ96RJ3 184 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 C12orf57Q99622 126 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 HCAR1Q9BXC0 346 aa14.23□□□□□ -0.13
SHH-201ENST00000297261 LSM5Q9Y4Y9 91 aaKnown RBP14.23□□□□□ -0.13
SHH-201ENST00000297261 GPR171O14626 319 aa14.22□□□□□ -0.13
SHH-201ENST00000297261 MAKP20794 623 aa14.22□□□□□ -0.13
SHH-201ENST00000297261 HIST1H1TP22492 207 aaPredicted RBP14.22□□□□□ -0.13
SHH-201ENST00000297261 YOD1Q5VVQ6 348 aaPredicted RBP14.22□□□□□ -0.13
SHH-201ENST00000297261 FAM71E1Q6IPT2 247 aa14.22□□□□□ -0.13
SHH-201ENST00000297261 RPL22L1Q6P5R6 122 aaKnown RBP14.22□□□□□ -0.13
SHH-201ENST00000297261 MRI1Q9BV20 369 aa14.22□□□□□ -0.13
SHH-201ENST00000297261 NRIP3Q9NQ35 241 aa14.22□□□□□ -0.13
SHH-201ENST00000297261 MED17Q9NVC6 651 aa14.22□□□□□ -0.13
SHH-201ENST00000297261 SCML1Q9UN30 329 aa14.22□□□□□ -0.13
SHH-201ENST00000297261 ALPK2Q86TB3 2170 aa14.22□□□□□ -0.13
SHH-201ENST00000297261 GGT3PA6NGU5 568 aa14.22□□□□□ -0.13
SHH-201ENST00000297261 RHPN2P1A8MT19 583 aa14.22□□□□□ -0.13
SHH-201ENST00000297261 ETHE1O95571 254 aa14.22□□□□□ -0.13
SHH-201ENST00000297261 HBQ1P09105 142 aa14.22□□□□□ -0.13
SHH-201ENST00000297261 ZNF750Q32MQ0 723 aa14.22□□□□□ -0.13
SHH-201ENST00000297261 SLC38A1Q9H2H9 487 aa14.22□□□□□ -0.13
SHH-201ENST00000297261 HRASLS2Q9NWW9 162 aa14.22□□□□□ -0.13
SHH-201ENST00000297261 ZNF281Q9Y2X9 895 aa14.22□□□□□ -0.13
SHH-201ENST00000297261 SLC5A10A0PJK1 596 aa14.22□□□□□ -0.13
SHH-201ENST00000297261 MAGEB4O15481 346 aaPredicted RBP14.22□□□□□ -0.13
SHH-201ENST00000297261 GREM1O60565 184 aa14.22□□□□□ -0.13
SHH-201ENST00000297261 TPOP07202 933 aa14.22□□□□□ -0.13
SHH-201ENST00000297261 CTHP32929 405 aa14.22□□□□□ -0.13
SHH-201ENST00000297261 CAMK2BQ13554 666 aa14.22□□□□□ -0.13
SHH-201ENST00000297261 AVPI1Q5T686 147 aa14.22□□□□□ -0.13
SHH-201ENST00000297261 FAM122BQ7Z309 247 aa14.22□□□□□ -0.13
SHH-201ENST00000297261 SP7Q8TDD2 431 aaPredicted RBP14.22□□□□□ -0.13
SHH-201ENST00000297261 UCN3Q969E3 161 aa14.22□□□□□ -0.13
SHH-201ENST00000297261 TMEM106AQ96A25 262 aa14.22□□□□□ -0.13
SHH-201ENST00000297261 CRB3Q9BUF7 120 aa14.22□□□□□ -0.13
SHH-201ENST00000297261 GLIPR2Q9H4G4 154 aa14.22□□□□□ -0.13
SHH-201ENST00000297261 LIN7BQ9HAP6 207 aa14.22□□□□□ -0.13
SHH-201ENST00000297261 RPS10-NUDT3A0A1W2PQS6 291 aa14.21□□□□□ -0.13
SHH-201ENST00000297261 TMEM72A0PK05 275 aa14.21□□□□□ -0.13
SHH-201ENST00000297261 ZNF726A6NNF4 738 aa14.21□□□□□ -0.13
SHH-201ENST00000297261 AGAP14A8MT82 685 aa14.21□□□□□ -0.13
SHH-201ENST00000297261 GAAP10253 952 aa14.21□□□□□ -0.13
SHH-201ENST00000297261 ATP5A1P25705 553 aaKnown RBP14.21□□□□□ -0.13
SHH-201ENST00000297261 RPS10P46783 165 aaKnown RBP14.21□□□□□ -0.13
SHH-201ENST00000297261 TMEM99Q8N816 258 aa14.21□□□□□ -0.13
SHH-201ENST00000297261 ELSPBP1Q96BH3 223 aa14.21□□□□□ -0.13
SHH-201ENST00000297261 PELI2Q9HAT8 420 aa14.21□□□□□ -0.13
SHH-201ENST00000297261 PDCD11Q14690 1871 aaKnown RBP14.21□□□□□ -0.13
SHH-201ENST00000297261 FAM186AA6NE01 2351 aa14.21□□□□□ -0.13
SHH-201ENST00000297261 D6RAR5 112 aa14.21□□□□□ -0.13
SHH-201ENST00000297261 GFYI3L273 518 aa14.21□□□□□ -0.13
SHH-201ENST00000297261 SCO2O43819 266 aa14.21□□□□□ -0.13
SHH-201ENST00000297261 GPRIN2O60269 458 aa14.21□□□□□ -0.13
SHH-201ENST00000297261 IFNA17P01571 189 aa14.21□□□□□ -0.13
SHH-201ENST00000297261 NPPBP16860 134 aa14.21□□□□□ -0.13
SHH-201ENST00000297261 RAD52P43351 418 aa14.21□□□□□ -0.13
SHH-201ENST00000297261 TNFRSF4P43489 277 aa14.21□□□□□ -0.13
SHH-201ENST00000297261 TIAL1Q01085 375 aaKnown RBP eCLIP14.21□□□□□ -0.13
SHH-201ENST00000297261 MFSD13AQ14CX5 517 aa14.21□□□□□ -0.13
SHH-201ENST00000297261 ZNF674Q2M3X9 581 aa14.21□□□□□ -0.13
SHH-201ENST00000297261 OR5M10Q6IEU7 315 aa14.21□□□□□ -0.13
SHH-201ENST00000297261 ACBD4Q8NC06 268 aa14.21□□□□□ -0.13
SHH-201ENST00000297261 PBDC1Q9BVG4 233 aa14.21□□□□□ -0.13
SHH-201ENST00000297261 SLC6A20Q9NP91 592 aa14.21□□□□□ -0.13
SHH-201ENST00000297261 MEPEQ9NQ76 525 aaPredicted RBP14.21□□□□□ -0.13
SHH-201ENST00000297261 MBNL1Q9NR56 388 aaKnown RBP14.21□□□□□ -0.13
SHH-201ENST00000297261 LDB3O75112 727 aa14.21□□□□□ -0.13
SHH-201ENST00000297261 B3GALNT1O75752 331 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms