RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 TRIML2Q8N7C3 387 aa18.4■□□□□ 0.54
VPS53-216ENST00000574029 TMEM99Q8N816 258 aa18.4■□□□□ 0.54
VPS53-216ENST00000574029 POMGNT2Q8NAT1 580 aa18.4■□□□□ 0.54
VPS53-216ENST00000574029 OR9K2Q8NGE7 335 aa18.4■□□□□ 0.54
VPS53-216ENST00000574029 ZBTB9Q96C00 473 aa18.4■□□□□ 0.54
VPS53-216ENST00000574029 ZNF385AQ96PM9 386 aaKnown RBP18.4■□□□□ 0.54
VPS53-216ENST00000574029 PANX1Q96RD7 426 aa18.4■□□□□ 0.54
VPS53-216ENST00000574029 NUF2Q9BZD4 464 aa18.4■□□□□ 0.54
VPS53-216ENST00000574029 KCNK9Q9NPC2 374 aa18.4■□□□□ 0.54
VPS53-216ENST00000574029 ARGLU1Q9NWB6 273 aaPredicted RBP18.4■□□□□ 0.54
VPS53-216ENST00000574029 PRDM4Q9UKN5 801 aa18.4■□□□□ 0.54
VPS53-216ENST00000574029 MOKQ9UQ07 419 aa18.4■□□□□ 0.54
VPS53-216ENST00000574029 ARFGEF3Q5TH69 2177 aa18.4■□□□□ 0.54
VPS53-216ENST00000574029 AQP7P3A6NL99 342 aa18.39■□□□□ 0.53
VPS53-216ENST00000574029 LMX1BO60663 402 aa18.39■□□□□ 0.53
VPS53-216ENST00000574029 AKR7A3O95154 331 aa18.39■□□□□ 0.53
VPS53-216ENST00000574029 DBIP07108 87 aaKnown RBP18.39■□□□□ 0.53
VPS53-216ENST00000574029 CDKN2CP42773 168 aa18.39■□□□□ 0.53
VPS53-216ENST00000574029 CEACAM7Q14002 265 aa18.39■□□□□ 0.53
VPS53-216ENST00000574029 HIKESHIQ53FT3 197 aa18.39■□□□□ 0.53
VPS53-216ENST00000574029 KLHL24Q6TFL4 600 aa18.39■□□□□ 0.53
VPS53-216ENST00000574029 ZNF440Q8IYI8 595 aa18.39■□□□□ 0.53
VPS53-216ENST00000574029 KIRREL3Q8IZU9 778 aa18.39■□□□□ 0.53
VPS53-216ENST00000574029 FBXO17Q96EF6 278 aa18.39■□□□□ 0.53
VPS53-216ENST00000574029 SHARPINQ9H0F6 387 aa18.39■□□□□ 0.53
VPS53-216ENST00000574029 MEAF6Q9HAF1 191 aa18.39■□□□□ 0.53
VPS53-216ENST00000574029 OBP2BQ9NPH6 170 aa18.39■□□□□ 0.53
VPS53-216ENST00000574029 NDUFS8O00217 210 aa18.38■□□□□ 0.53
VPS53-216ENST00000574029 ALDOCP09972 364 aaKnown RBP18.38■□□□□ 0.53
VPS53-216ENST00000574029 GZMKP49863 264 aa18.38■□□□□ 0.53
VPS53-216ENST00000574029 PDLIM4P50479 330 aa18.38■□□□□ 0.53
VPS53-216ENST00000574029 UFM1P61960 85 aa18.38■□□□□ 0.53
VPS53-216ENST00000574029 OR7A5Q15622 319 aa18.38■□□□□ 0.53
VPS53-216ENST00000574029 MAPK11Q15759 364 aa18.38■□□□□ 0.53
VPS53-216ENST00000574029 COX20Q5RI15 118 aa18.38■□□□□ 0.53
VPS53-216ENST00000574029 ABHD12BQ7Z5M8 362 aaPredicted RBP18.38■□□□□ 0.53
VPS53-216ENST00000574029 ARIH2OSQ8N7S6 290 aa18.38■□□□□ 0.53
VPS53-216ENST00000574029 AURKBQ96GD4 344 aaPredicted RBP18.38■□□□□ 0.53
VPS53-216ENST00000574029 SORCS2Q96PQ0 1159 aa18.38■□□□□ 0.53
VPS53-216ENST00000574029 FKBP7Q9Y680 259 aa18.38■□□□□ 0.53
VPS53-216ENST00000574029 IGHV1-18A0A0C4DH31 117 aa18.37■□□□□ 0.53
VPS53-216ENST00000574029 CDHR4A6H8M9 788 aa18.37■□□□□ 0.53
VPS53-216ENST00000574029 KLF11O14901 512 aa18.37■□□□□ 0.53
VPS53-216ENST00000574029 PGRP06401 933 aa18.37■□□□□ 0.53
VPS53-216ENST00000574029 NR2F1P10589 423 aa18.37■□□□□ 0.53
VPS53-216ENST00000574029 CDH2P19022 906 aaPredicted RBP18.37■□□□□ 0.53
VPS53-216ENST00000574029 CXCR1P25024 350 aa18.37■□□□□ 0.53
VPS53-216ENST00000574029 IL12AP29459 219 aa18.37■□□□□ 0.53
VPS53-216ENST00000574029 ACAA2P42765 397 aaKnown RBP18.37■□□□□ 0.53
VPS53-216ENST00000574029 P2RY4P51582 365 aa18.37■□□□□ 0.53
VPS53-216ENST00000574029 NME5P56597 212 aa18.37■□□□□ 0.53
VPS53-216ENST00000574029 MAGOHP61326 146 aaKnown RBP18.37■□□□□ 0.53
VPS53-216ENST00000574029 LRRC74AQ0VAA2 488 aa18.37■□□□□ 0.53
VPS53-216ENST00000574029 KRTAP24-1Q3LI83 254 aa18.37■□□□□ 0.53
VPS53-216ENST00000574029 AGBL2Q5U5Z8 902 aa18.37■□□□□ 0.53
VPS53-216ENST00000574029 ZNF621Q6ZSS3 439 aa18.37■□□□□ 0.53
VPS53-216ENST00000574029 HDXQ7Z353 690 aa18.37■□□□□ 0.53
VPS53-216ENST00000574029 OR52E6Q96RD3 313 aa18.37■□□□□ 0.53
VPS53-216ENST00000574029 VIPAS39Q9H9C1 493 aa18.37■□□□□ 0.53
VPS53-216ENST00000574029 AIG1Q9NVV5 245 aa18.37■□□□□ 0.53
VPS53-216ENST00000574029 RLIMQ9NVW2 624 aa18.37■□□□□ 0.53
VPS53-216ENST00000574029 TMEM45AQ9NWC5 275 aa18.37■□□□□ 0.53
VPS53-216ENST00000574029 TMEM120BA0PK00 339 aa18.36■□□□□ 0.53
VPS53-216ENST00000574029 GSNP06396 782 aa18.36■□□□□ 0.53
VPS53-216ENST00000574029 PAX7P23759 505 aa18.36■□□□□ 0.53
VPS53-216ENST00000574029 IGFBP5P24593 272 aa18.36■□□□□ 0.53
VPS53-216ENST00000574029 NR4A2P43354 598 aa18.36■□□□□ 0.53
VPS53-216ENST00000574029 GGTLC2Q14390 218 aa18.36■□□□□ 0.53
VPS53-216ENST00000574029 TBRG1Q3YBR2 411 aa18.36■□□□□ 0.53
VPS53-216ENST00000574029 GPAT4Q86UL3 456 aa18.36■□□□□ 0.53
VPS53-216ENST00000574029 PEX5LQ8IYB4 626 aa18.36■□□□□ 0.53
VPS53-216ENST00000574029 OR1K1Q8NGR3 316 aa18.36■□□□□ 0.53
VPS53-216ENST00000574029 PNPT1Q8TCS8 783 aaKnown RBP18.36■□□□□ 0.53
VPS53-216ENST00000574029 SLC38A2Q96QD8 506 aa18.36■□□□□ 0.53
VPS53-216ENST00000574029 PIMREGQ9BSJ6 248 aa18.36■□□□□ 0.53
VPS53-216ENST00000574029 PRR14Q9BWN1 585 aa18.36■□□□□ 0.53
VPS53-216ENST00000574029 PNPOQ9NVS9 261 aa18.36■□□□□ 0.53
VPS53-216ENST00000574029 DSPPQ9NZW4 1301 aa18.36■□□□□ 0.53
VPS53-216ENST00000574029 VAMP5O95183 116 aa18.35■□□□□ 0.53
VPS53-216ENST00000574029 LGI1O95970 557 aa18.35■□□□□ 0.53
VPS53-216ENST00000574029 GKN3PP0CG01 181 aa18.35■□□□□ 0.53
VPS53-216ENST00000574029 BGNP21810 368 aa18.35■□□□□ 0.53
VPS53-216ENST00000574029 SERPINF1P36955 418 aa18.35■□□□□ 0.53
VPS53-216ENST00000574029 WDR4P57081 412 aaKnown RBP18.35■□□□□ 0.53
VPS53-216ENST00000574029 SNRPD2P62316 118 aaKnown RBP18.35■□□□□ 0.53
VPS53-216ENST00000574029 TMEM225Q6GV28 225 aa18.35■□□□□ 0.53
VPS53-216ENST00000574029 WBP2NLQ6ICG8 309 aa18.35■□□□□ 0.53
VPS53-216ENST00000574029 FAM166AQ6J272 317 aa18.35■□□□□ 0.53
VPS53-216ENST00000574029 ZNF836Q6ZNA1 936 aa18.35■□□□□ 0.53
VPS53-216ENST00000574029 CREB3L2Q70SY1 520 aa18.35■□□□□ 0.53
VPS53-216ENST00000574029 SPATA19Q7Z5L4 167 aa18.35■□□□□ 0.53
VPS53-216ENST00000574029 VRK2Q86Y07 508 aa18.35■□□□□ 0.53
VPS53-216ENST00000574029 OR52P1PQ8NH57 321 aa18.35■□□□□ 0.53
VPS53-216ENST00000574029 KATNB1Q9BVA0 655 aa18.35■□□□□ 0.53
VPS53-216ENST00000574029 TAPBPLQ9BX59 468 aa18.35■□□□□ 0.53
VPS53-216ENST00000574029 MYOZ1Q9NP98 299 aaPredicted RBP18.35■□□□□ 0.53
VPS53-216ENST00000574029 CA10Q9NS85 328 aa18.35■□□□□ 0.53
VPS53-216ENST00000574029 CRNNQ9UBG3 495 aaPredicted RBP18.35■□□□□ 0.53
VPS53-216ENST00000574029 KCNS2Q9ULS6 477 aa18.35■□□□□ 0.53
VPS53-216ENST00000574029 GPR45Q9Y5Y3 372 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 191.8 ms