RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 GTF2F2P13984 249 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 SQSTM1Q13501 440 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 CDK5R1Q15078 307 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 CDONQ4KMG0 1287 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 TMEM255AQ5JRV8 349 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 OR52R1Q8NGF1 315 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 FGF11Q92914 225 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 LMF1Q96S06 567 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 PRSS27Q9BQR3 290 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 NRIP3Q9NQ35 241 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 ING1Q9UK53 422 aaPredicted RBP13.34□□□□□ -0.27
VPS35-210ENST00000568784 V9GY05 133 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 FRMPD3Q5JV73 1810 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 MEIKINA0A087WXM9 373 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 ELOA3DA6NLF2 546 aaPredicted RBP13.34□□□□□ -0.27
VPS35-210ENST00000568784 NDUFB2O95178 105 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 ELOA3BQ3SY89 546 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 ELP2Q6IA86 826 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 ELOA3Q8NG57 546 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 MRPL48Q96GC5 212 aaKnown RBP13.34□□□□□ -0.27
VPS35-210ENST00000568784 ZNF681Q96N22 645 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 ZNF649Q9BS31 505 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 SLC17A9Q9BYT1 436 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 CA10Q9NS85 328 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 CES1P1Q9UKY3 287 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 A0A087WV48 116 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 TCRBV16S1A1N1A0A5B0 115 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 P2RX6O15547 441 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 RP2O75695 350 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 ACSM4P0C7M7 580 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 IL9P15248 144 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 ARSKQ6UWY0 536 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 KIAA1324Q6UXG2 1013 aaKnown RBP13.34□□□□□ -0.27
VPS35-210ENST00000568784 VN1R4Q7Z5H5 301 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 MFSD9Q8NBP5 474 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 COX14Q96I36 57 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 CXorf58Q96LI9 332 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 EXO5Q9H790 373 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 SDHAF2Q9NX18 166 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 FBXL2Q9UKC9 423 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 PDCD5O14737 125 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 EML2O95834 649 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 ITPKBP27987 946 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 MMP15P51511 669 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 GPR139Q6DWJ6 353 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 MRM1Q6IN84 353 aaKnown RBP13.33□□□□□ -0.28
VPS35-210ENST00000568784 FIGLAQ6QHK4 219 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 ZNF627Q7L945 461 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 BPHLQ86WA6 291 aaPredicted RBP13.33□□□□□ -0.28
VPS35-210ENST00000568784 SMIM4Q8WVI0 70 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 SGTBQ96EQ0 304 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 LINC00052Q96N35 136 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 SORCS2Q96PQ0 1159 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 RSPH9Q9H1X1 276 aaPredicted RBP13.33□□□□□ -0.28
VPS35-210ENST00000568784 CD93Q9NPY3 652 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 NCDNQ9UBB6 729 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 NOTCH4Q99466 2003 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 TRAV18A0A075B6X5 111 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 POM121BA6NF01 834 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 C4orf47A7E2U8 309 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 RDH16O75452 317 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 RBBP9O75884 186 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 CSTAP01040 98 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 NFYAP23511 347 aaPredicted RBP13.33□□□□□ -0.28
VPS35-210ENST00000568784 CDK2P24941 298 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 EMDP50402 254 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 ART1P52961 327 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 ACTA2P62736 377 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 ACTG2P63267 376 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 ARHGAP11BQ3KRB8 267 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 SCGB2B2Q4G0G5 96 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 TMEM65Q6PI78 240 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 MRGPREQ86SM8 312 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 SAMD14Q8IZD0 417 aaPredicted RBP13.33□□□□□ -0.28
VPS35-210ENST00000568784 FRMD1Q8N878 549 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 CDRT4Q8N9R6 151 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 RELL2Q8NC24 303 aaPredicted RBP13.33□□□□□ -0.28
VPS35-210ENST00000568784 LSM14AQ8ND56 463 aaKnown RBP13.33□□□□□ -0.28
VPS35-210ENST00000568784 OR5M1Q8NGP8 315 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 RAB7BQ96AH8 199 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 SMIM19Q96E16 107 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 OR1F2PQ96R84 312 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 ZMAT3Q9HA38 289 aaKnown RBP13.33□□□□□ -0.28
VPS35-210ENST00000568784 FARSAQ9Y285 508 aaKnown RBP13.33□□□□□ -0.28
VPS35-210ENST00000568784 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 ZNF35P13682 527 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 DRD3P35462 400 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 STARP49675 285 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 BDH1Q02338 343 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 NSMAFQ92636 917 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 GIMAP5Q96F15 307 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 Q96M85 177 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 PITHD1Q9GZP4 211 aaPredicted RBP13.33□□□□□ -0.28
VPS35-210ENST00000568784 FBXL3Q9UKT7 428 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 MAFFQ9ULX9 164 aa13.33□□□□□ -0.28
VPS35-210ENST00000568784 A0A0G2JK05 382 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 C11orf98E9PRG8 122 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 PEBP1P30086 187 aaKnown RBP13.32□□□□□ -0.28
VPS35-210ENST00000568784 MNDAP41218 407 aa13.32□□□□□ -0.28
VPS35-210ENST00000568784 ENPP2Q13822 863 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms