RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 PPP4R4Q6NUP7 873 aa11.46□□□□□ -0.57
SHMT2-227ENST00000557269 MBOAT2Q6ZWT7 520 aa11.46□□□□□ -0.57
SHMT2-227ENST00000557269 ZNF771Q7L3S4 317 aaPredicted RBP11.46□□□□□ -0.57
SHMT2-227ENST00000557269 CHMP1BQ7LBR1 199 aa11.46□□□□□ -0.57
SHMT2-227ENST00000557269 SLC46A3Q7Z3Q1 461 aa11.46□□□□□ -0.57
SHMT2-227ENST00000557269 CCDC103Q8IW40 242 aa11.46□□□□□ -0.57
SHMT2-227ENST00000557269 C10orf53Q8N6V4 93 aa11.46□□□□□ -0.57
SHMT2-227ENST00000557269 TMEM99Q8N816 258 aa11.46□□□□□ -0.57
SHMT2-227ENST00000557269 MFSD8Q8NHS3 518 aa11.46□□□□□ -0.57
SHMT2-227ENST00000557269 LRTOMTQ8WZ04 291 aa11.46□□□□□ -0.57
SHMT2-227ENST00000557269 SLC19A3Q9BZV2 496 aa11.46□□□□□ -0.57
SHMT2-227ENST00000557269 ANKRD19PQ9H560 264 aa11.46□□□□□ -0.57
SHMT2-227ENST00000557269 CALHM2Q9HA72 323 aa11.46□□□□□ -0.57
SHMT2-227ENST00000557269 MED31Q9Y3C7 131 aa11.46□□□□□ -0.57
SHMT2-227ENST00000557269 E9PLN8 166 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 CCL21O00585 134 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 CLOCKO15516 846 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 LRRTM2O43300 516 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 RRP9O43818 475 aaKnown RBP11.45□□□□□ -0.58
SHMT2-227ENST00000557269 KRT36O76013 467 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 SYNGR4O95473 234 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 IFI30P13284 250 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 GRPRP30550 384 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 PTGER4P35408 488 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 SMIM11AP58511 58 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 CSNK2A1P68400 391 aaPredicted RBP11.45□□□□□ -0.58
SHMT2-227ENST00000557269 SLC35A1P78382 337 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 PRKCDQ05655 676 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 PMPCAQ10713 525 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 C5orf46Q6UWT4 87 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 B3GNT6Q6ZMB0 384 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 AMIGO2Q86SJ2 522 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 FJX1Q86VR8 437 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 NAXEQ8NCW5 288 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 OR4K5Q8NGD3 323 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 OR6S1Q8NH40 331 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 ABHD3Q8WU67 409 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 WNT2BQ93097 391 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 CPNE4Q96A23 557 aaPredicted RBP11.45□□□□□ -0.58
SHMT2-227ENST00000557269 BPIFA2Q96DR5 249 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 SGTBQ96EQ0 304 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 EPYCQ99645 322 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 GPA33Q99795 319 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 VKORC1Q9BQB6 163 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 TAPBPLQ9BX59 468 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 REEP1Q9H902 201 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 TIGARQ9NQ88 270 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 PAQR5Q9NXK6 330 aaPredicted RBP11.45□□□□□ -0.58
SHMT2-227ENST00000557269 DNAJB9Q9UBS3 223 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 ING1Q9UK53 422 aaPredicted RBP11.45□□□□□ -0.58
SHMT2-227ENST00000557269 SAMHD1Q9Y3Z3 626 aaKnown RBP11.45□□□□□ -0.58
SHMT2-227ENST00000557269 ZNF175Q9Y473 711 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 MPDZO75970 2070 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 NBASA2RRP1 2371 aa11.45□□□□□ -0.58
SHMT2-227ENST00000557269 MBD3L4A6NDZ8 208 aaPredicted RBP11.44□□□□□ -0.58
SHMT2-227ENST00000557269 MBD3L3A6NE82 208 aaPredicted RBP11.44□□□□□ -0.58
SHMT2-227ENST00000557269 MBD3L5A6NJ08 208 aaPredicted RBP11.44□□□□□ -0.58
SHMT2-227ENST00000557269 M0R082 166 aa11.44□□□□□ -0.58
SHMT2-227ENST00000557269 CDC42EP2O14613 210 aa11.44□□□□□ -0.58
SHMT2-227ENST00000557269 HNRNPRO43390 633 aaKnown RBP11.44□□□□□ -0.58
SHMT2-227ENST00000557269 OR2T1O43869 369 aa11.44□□□□□ -0.58
SHMT2-227ENST00000557269 OR7A10O76100 309 aa11.44□□□□□ -0.58
SHMT2-227ENST00000557269 HPRP00739 348 aa11.44□□□□□ -0.58
SHMT2-227ENST00000557269 HOXD4P09016 255 aaPredicted RBP11.44□□□□□ -0.58
SHMT2-227ENST00000557269 ASAH2BP0C7U1 165 aa11.44□□□□□ -0.58
SHMT2-227ENST00000557269 HOXB6P17509 224 aaKnown RBP11.44□□□□□ -0.58
SHMT2-227ENST00000557269 GPR4P46093 362 aa11.44□□□□□ -0.58
SHMT2-227ENST00000557269 OMPP47874 163 aa11.44□□□□□ -0.58
SHMT2-227ENST00000557269 CASP6P55212 293 aa11.44□□□□□ -0.58
SHMT2-227ENST00000557269 CTBP2P56545 445 aa11.44□□□□□ -0.58
SHMT2-227ENST00000557269 FOXF2Q12947 444 aa11.44□□□□□ -0.58
SHMT2-227ENST00000557269 ATP6AP1Q15904 470 aa11.44□□□□□ -0.58
SHMT2-227ENST00000557269 OTUD3Q5T2D3 398 aaPredicted RBP11.44□□□□□ -0.58
SHMT2-227ENST00000557269 ANKRD34AQ69YU3 496 aa11.44□□□□□ -0.58
SHMT2-227ENST00000557269 ZNF770Q6IQ21 691 aaPredicted RBP11.44□□□□□ -0.58
SHMT2-227ENST00000557269 FCRLAQ7L513 359 aa11.44□□□□□ -0.58
SHMT2-227ENST00000557269 ZER1Q7Z7L7 766 aa11.44□□□□□ -0.58
SHMT2-227ENST00000557269 RNF113BQ8IZP6 322 aaKnown RBP11.44□□□□□ -0.58
SHMT2-227ENST00000557269 HS3ST5Q8IZT8 346 aa11.44□□□□□ -0.58
SHMT2-227ENST00000557269 KDM8Q8N371 416 aa11.44□□□□□ -0.58
SHMT2-227ENST00000557269 OR9Q2Q8NGE9 314 aa11.44□□□□□ -0.58
SHMT2-227ENST00000557269 MBD3L2Q8NHZ7 208 aaPredicted RBP11.44□□□□□ -0.58
SHMT2-227ENST00000557269 ZNF417Q8TAU3 575 aa11.44□□□□□ -0.58
SHMT2-227ENST00000557269 RNF128Q8TEB7 428 aa11.44□□□□□ -0.58
SHMT2-227ENST00000557269 FAM46AQ96IP4 442 aaKnown RBP11.44□□□□□ -0.58
SHMT2-227ENST00000557269 ZNF587Q96SQ5 575 aaPredicted RBP11.44□□□□□ -0.58
SHMT2-227ENST00000557269 PKP2Q99959 881 aa11.44□□□□□ -0.58
SHMT2-227ENST00000557269 YY1AP1Q9H869 796 aa11.44□□□□□ -0.58
SHMT2-227ENST00000557269 RNF122Q9H9V4 155 aa11.44□□□□□ -0.58
SHMT2-227ENST00000557269 S100A14Q9HCY8 104 aa11.44□□□□□ -0.58
SHMT2-227ENST00000557269 KLHL13Q9P2N7 655 aa11.44□□□□□ -0.58
SHMT2-227ENST00000557269 MCTS1Q9ULC4 181 aaKnown RBP11.44□□□□□ -0.58
SHMT2-227ENST00000557269 CLEC4AQ9UMR7 237 aa11.44□□□□□ -0.58
SHMT2-227ENST00000557269 MAGED1Q9Y5V3 778 aaPredicted RBP11.44□□□□□ -0.58
SHMT2-227ENST00000557269 POLEQ07864 2286 aa11.44□□□□□ -0.58
SHMT2-227ENST00000557269 A0A0G2JNJ9 132 aa11.43□□□□□ -0.58
SHMT2-227ENST00000557269 AQP7P3A6NL99 342 aa11.43□□□□□ -0.58
SHMT2-227ENST00000557269 ZNF716A6NP11 495 aa11.43□□□□□ -0.58
SHMT2-227ENST00000557269 MS4A18H0YCH9 400 aa11.43□□□□□ -0.58
SHMT2-227ENST00000557269 GNGT2O14610 69 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms