RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 IL21RQ9HBE5 538 aa4.47□□□□□ -1.69
LIMA1-214ENST00000552783 MEPEQ9NQ76 525 aaPredicted RBP4.47□□□□□ -1.69
LIMA1-214ENST00000552783 KLHL28Q9NXS3 571 aa4.47□□□□□ -1.69
LIMA1-214ENST00000552783 CLDND1Q9NY35 253 aa4.47□□□□□ -1.69
LIMA1-214ENST00000552783 COA4Q9NYJ1 87 aa4.47□□□□□ -1.69
LIMA1-214ENST00000552783 NFKBIL1Q9UBC1 381 aaPredicted RBP4.47□□□□□ -1.69
LIMA1-214ENST00000552783 PFDN2Q9UHV9 154 aa4.47□□□□□ -1.69
LIMA1-214ENST00000552783 KCNE5Q9UJ90 142 aa4.47□□□□□ -1.69
LIMA1-214ENST00000552783 ZNF223Q9UK11 482 aaPredicted RBP4.47□□□□□ -1.69
LIMA1-214ENST00000552783 MAP1BP46821 2468 aaKnown RBP4.46□□□□□ -1.69
LIMA1-214ENST00000552783 GIMAP1-GIMAP5A0A087WTJ2 511 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 TRAV14DV4A0A0A6YYC5 116 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 A0A1W2PP55 124 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 FAM171A2A8MVW0 826 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 PRRT4C9JH25 899 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 CACNB4O00305 520 aaPredicted RBP4.46□□□□□ -1.69
LIMA1-214ENST00000552783 ZNF254O75437 659 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 PPP1R3DO95685 299 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 LDOC1O95751 146 aaPredicted RBP4.46□□□□□ -1.69
LIMA1-214ENST00000552783 EFEMP2O95967 443 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 MPGP29372 298 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 CALCRP30988 508 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 VEGFBP49765 207 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 KHKP50053 298 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 NRG3P56975 720 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 GPR85P60893 370 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 CBFBQ13951 182 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 GK2Q14410 553 aaPredicted RBP4.46□□□□□ -1.69
LIMA1-214ENST00000552783 OTPQ5XKR4 325 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 OR4C11Q6IEV9 310 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 SLC36A1Q7Z2H8 476 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 HSD17B13Q7Z5P4 300 aaPredicted RBP4.46□□□□□ -1.69
LIMA1-214ENST00000552783 C12orf40Q86WS4 652 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 DCUN1D3Q8IWE4 304 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 CDH26Q8IXH8 852 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 PDZD9Q8IXQ8 264 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 ZFP82Q8N141 532 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 FAM71CQ8NEG0 241 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 CDS1Q92903 461 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 DVL3Q92997 716 aaPredicted RBP4.46□□□□□ -1.69
LIMA1-214ENST00000552783 RNF166Q96A37 237 aaPredicted RBP4.46□□□□□ -1.69
LIMA1-214ENST00000552783 PNPLA2Q96AD5 504 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 OTUB2Q96DC9 234 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 GIMAP5Q96F15 307 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 DTD2Q96FN9 168 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 IFT27Q9BW83 186 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 ACTR6Q9GZN1 396 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 OR52A5Q9H2C5 316 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 ADAP2Q9NPF8 381 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 ACSS1Q9NUB1 689 aaPredicted RBP4.46□□□□□ -1.69
LIMA1-214ENST00000552783 MED9Q9NWA0 146 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 TAS2R5Q9NYW4 299 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 OR5V1Q9UGF6 321 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 OR10H1Q9Y4A9 318 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 PLEKHM1Q9Y4G2 1056 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 NPFFR2Q9Y5X5 522 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 SESN1Q9Y6P5 492 aa4.46□□□□□ -1.69
LIMA1-214ENST00000552783 SCN5AQ14524 2016 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 A0A0G2JPF8 293 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 ANKRD20A5PA0PJZ0 165 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 LRIT2A6NDA9 550 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 UNC119BA6NIH7 251 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 LINC00587B1AMM8 73 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 HNRNPCL3B7ZW38 293 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 PEX12O00623 359 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 CREBL2O60519 120 aaPredicted RBP4.46□□□□□ -1.7
LIMA1-214ENST00000552783 AIFM1O95831 613 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 NGFRP08138 427 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 HNRNPCL4P0DMR1 293 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 SAGP10523 405 aaPredicted RBP4.46□□□□□ -1.7
LIMA1-214ENST00000552783 SRMP19623 302 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 CERS1P27544 350 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 RAP2BP61225 183 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 PITPNAQ00169 270 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 MC2RQ01718 297 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 FHL1Q13642 323 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 SLC9A5Q14940 896 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 HFEQ30201 348 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 MAMSTRQ6ZN01 415 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 ZNF836Q6ZNA1 936 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 FRRS1Q6ZNA5 592 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 NDUFAF7Q7L592 441 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 LDLRAD3Q86YD5 345 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 PUSL1Q8N0Z8 303 aaKnown RBP4.46□□□□□ -1.7
LIMA1-214ENST00000552783 LINC00471Q8N535 108 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 SDR9C7Q8NEX9 313 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 OR4E2Q8NGC2 313 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 OR10K1Q8NGX5 313 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 SYNPRQ8TBG9 265 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 ADAMTS15Q8TE58 950 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 NARS2Q96I59 477 aaKnown RBP4.46□□□□□ -1.7
LIMA1-214ENST00000552783 CMSS1Q9BQ75 279 aaKnown RBP4.46□□□□□ -1.7
LIMA1-214ENST00000552783 LGR4Q9BXB1 951 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 C1QTNF2Q9BXJ5 285 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 NKX6-2Q9C056 277 aaPredicted RBP4.46□□□□□ -1.7
LIMA1-214ENST00000552783 MED17Q9NVC6 651 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 SAGE1Q9NXZ1 904 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 ZMAT5Q9UDW3 170 aaKnown RBP4.46□□□□□ -1.7
LIMA1-214ENST00000552783 DPP7Q9UHL4 492 aa4.46□□□□□ -1.7
LIMA1-214ENST00000552783 ATPIF1Q9UII2 106 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms