RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 HOXD4P09016 255 aaPredicted RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 ADORA3P0DMS8 318 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 OPN1MW2P0DN77 364 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 OPN1MW3P0DN78 364 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 UMPSP11172 480 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 TDGF1P13385 188 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 F3P13726 295 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 CD99P14209 185 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 UQCRBP14927 111 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 CYP11B1P15538 503 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF250P15622 560 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 RAB4AP20338 218 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 OGNP20774 298 aaKnown RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 WARSP23381 471 aaKnown RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 AHCYP23526 432 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 F8A1P23610 371 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 GATA2P23769 480 aaPredicted RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 MAPK3P27361 379 aaPredicted RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 NMT1P30419 496 aaKnown RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 SERPINB1P30740 379 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 MAT2AP31153 395 aaKnown RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 HNRNPH3P31942 346 aaKnown RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 GPR183P32249 361 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 CYLC1P35663 651 aaPredicted RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 ATP5C1P36542 298 aaKnown RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 EIF1P41567 113 aaKnown RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 ACTR1BP42025 376 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 CASP3P42574 277 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 MAGEA4P43358 317 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 RABIFP47224 123 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 ACOT2P49753 483 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 SERPINH1P50454 418 aaKnown RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 TPMTP51580 245 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 ARPP19P56211 112 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 CLDN17P56750 224 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 YWHAGP61981 247 aaKnown RBP eCLIP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 RPL10AP62906 217 aaKnown RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 TRA2BP62995 288 aaKnown RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 MYBPC1Q00872 1141 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 GLO1Q04760 184 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 IL10RBQ08334 325 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 PUDPQ08623 228 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 MGAT3Q09327 533 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 STX5Q13190 355 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 BTN1A1Q13410 526 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 MED21Q13503 144 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 KIAA0141Q14154 515 aaPredicted RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 GCKRQ14397 625 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 GRB7Q14451 532 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 OXA1LQ15070 435 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 DPYSL2Q16555 572 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 DUSP5Q16690 384 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 LRRC36Q1X8D7 754 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 FAM174BQ3ZCQ3 159 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 FAM106AQ4KMX7 169 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 DNAL1Q4LDG9 190 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 TOR1AIP1Q5JTV8 583 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 ACER2Q5QJU3 275 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 SLC25A30Q5SVS4 291 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 LPCAT4Q643R3 524 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 FAM91A1Q658Y4 838 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 PTRHD1Q6GMV3 140 aaKnown RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 CDC42EP5Q6NZY7 148 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 PRMT9Q6P2P2 845 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 MOXD1Q6UVY6 613 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 C3P1Q6ZMU1 363 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF841Q6ZN19 808 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 FRA10AC1Q70Z53 315 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 CYS1Q717R9 158 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 ERN2Q76MJ5 926 aaKnown RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 GDPD3Q7L5L3 318 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 NIPA1Q7RTP0 329 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 TRMT11Q7Z4G4 463 aaKnown RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 SH2D6Q7Z4S9 175 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 NRARPQ7Z6K4 114 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 ARPINQ7Z6K5 226 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 LINC00523Q86TU6 105 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 TAC4Q86UU9 113 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 SLC25A42Q86VD7 318 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF410Q86VK4 478 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 TIGD4Q8IY51 512 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 CPNE9Q8IYJ1 553 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 GPR65Q8IYL9 337 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 THNSL1Q8IYQ7 743 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 CLYBLQ8N0X4 340 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 PDIK1LQ8N165 341 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 CYP4Z2PQ8N1L4 340 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 ABHD12Q8N2K0 398 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 Q8N377 158 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 LIX1Q8N485 282 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 ARL14Q8N4G2 192 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 CCDC185Q8N715 623 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 BANPQ8N9N5 519 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 FNDC5Q8NAU1 212 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 OR52H1Q8NGJ2 320 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 GRPEL2Q8TAA5 225 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 DEPDC1BQ8WUY9 529 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 SLC5A11Q8WWX8 675 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 STMN2Q93045 179 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 CLDN23Q96B33 292 aa1.77□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms