RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 ALOX5P09917 674 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 UROSP10746 265 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 MLNP12872 115 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 MMP9P14780 707 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 CD33P20138 364 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 GABRA5P31644 462 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 CETN2P41208 172 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 SELENOPP49908 381 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 P2RX1P51575 399 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 PCBP3P57721 371 aaKnown RBP3.97□□□□□ -1.77
USP4-209ENST00000475873 FGF12P61328 243 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 RAE1P78406 368 aaKnown RBP3.97□□□□□ -1.77
USP4-209ENST00000475873 DLG1Q12959 904 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 ZMYND11Q15326 602 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 TSTQ16762 297 aaKnown RBP3.97□□□□□ -1.77
USP4-209ENST00000475873 MSS51Q4VC12 460 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 KLHL26Q53HC5 615 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 EXOSC6Q5RKV6 272 aaKnown RBP3.97□□□□□ -1.77
USP4-209ENST00000475873 LIPJQ5W064 366 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 FAM9CQ8IZT9 166 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 TXLNBQ8N3L3 684 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 PAQR4Q8N4S7 273 aaPredicted RBP3.97□□□□□ -1.77
USP4-209ENST00000475873 TEX9Q8N6V9 391 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 PAPD5Q8NDF8 572 aaKnown RBP3.97□□□□□ -1.77
USP4-209ENST00000475873 Q8NFD4 153 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 TBC1D15Q8TC07 691 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 PHOSPHO1Q8TCT1 267 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 ADAMTS16Q8TE57 1224 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 TRPC4APQ8TEL6 797 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 DDB2Q92466 427 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 TMEM45BQ96B21 275 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 NEURL3Q96EH8 262 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 GIMAP5Q96F15 307 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 TSPAN17Q96FV3 270 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 C16orf58Q96GQ5 468 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 TIMD4Q96H15 378 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 CDK15Q96Q40 435 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 DIRC2Q96SL1 478 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 SERPINI1Q99574 410 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 CITED2Q99967 270 aaPredicted RBP3.97□□□□□ -1.77
USP4-209ENST00000475873 BPIFA3Q9BQP9 254 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 LAT2Q9GZY6 243 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 LACRTQ9GZZ8 138 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 SEMA6AQ9H2E6 1030 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 CAB39LQ9H9S4 337 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 EQTNQ9NQ60 294 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 PFDN4Q9NQP4 134 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 SLC35C2Q9NQQ7 365 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 ZNF224Q9NZL3 707 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 OPTCQ9UBM4 332 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 SLC9A8Q9Y2E8 581 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 REXO2Q9Y3B8 237 aaKnown RBP3.97□□□□□ -1.77
USP4-209ENST00000475873 FAT2Q9NYQ8 4349 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 KIR2DS1A0A191URI9 304 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 C22orf46C9J442 243 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 NPIPB9F8W1W9 429 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 OR7A17O14581 309 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 TM9SF1O15321 606 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 MFAP3LO75121 409 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 PIAS1O75925 651 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 ZFPL1O95159 310 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 KCNH1O95259 989 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 PMS2P2O95744 297 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 IGHV1-46P01743 117 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 HLA-HP01893 362 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 OPN1SWP03999 348 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 PROCP04070 461 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 S100BP04271 92 aaPredicted RBP3.96□□□□□ -1.78
USP4-209ENST00000475873 SBK2P0C263 348 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 IMPDH2P12268 514 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 CHN1P15882 459 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 LMO1P25800 156 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 TYK2P29597 1187 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 ARR3P36575 388 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 P2RY4P51582 365 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 PSMD4P55036 377 aaKnown RBP3.96□□□□□ -1.78
USP4-209ENST00000475873 SUMO3P55854 103 aaPredicted RBP3.96□□□□□ -1.78
USP4-209ENST00000475873 UBASH3AP57075 661 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 SESN3P58005 492 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 CSNK2A1P68400 391 aaPredicted RBP3.96□□□□□ -1.78
USP4-209ENST00000475873 ARF1P84077 181 aaKnown RBP3.96□□□□□ -1.78
USP4-209ENST00000475873 GLO1Q04760 184 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 LARS2Q15031 903 aaKnown RBP3.96□□□□□ -1.78
USP4-209ENST00000475873 DUSP5Q16690 384 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 NKPD1Q17RQ9 610 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 HFEQ30201 348 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 PCGF3Q3KNV8 242 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 MMEL1Q495T6 779 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 GPR157Q5UAW9 335 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 SASS6Q6UVJ0 657 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 C6orf89Q6UWU4 347 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 GDPGP1Q6ZNW5 385 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 NDUFA11Q86Y39 141 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 ZNF584Q8IVC4 421 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 MISPQ8IVT2 679 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 FITM2Q8N6M3 262 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 C1orf52Q8N6N3 182 aaKnown RBP3.96□□□□□ -1.78
USP4-209ENST00000475873 POMGNT2Q8NAT1 580 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 RNF214Q8ND24 703 aa3.96□□□□□ -1.78
USP4-209ENST00000475873 OR9K2Q8NGE7 335 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms