RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 CCDC22O60826 627 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 HUS1O60921 280 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 SULT1C4O75897 302 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 AP2A2O94973 939 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 PCCBP05166 539 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 ALPLP05186 524 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 FGF3P11487 239 aaPredicted RBP3.52□□□□□ -1.85
HMGB3-203ENST00000430118 PRG2P13727 222 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 HPGDP15428 266 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 CXCR2P25025 360 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 PTPN6P29350 595 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 PRDX2P32119 198 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 FEN1P39748 380 aaKnown RBP3.52□□□□□ -1.85
HMGB3-203ENST00000430118 GDI2P50395 445 aaKnown RBP3.52□□□□□ -1.85
HMGB3-203ENST00000430118 CDK9P50750 372 aaKnown RBP3.52□□□□□ -1.85
HMGB3-203ENST00000430118 GBX2P52951 348 aaPredicted RBP3.52□□□□□ -1.85
HMGB3-203ENST00000430118 PEX3P56589 373 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 STX17P56962 302 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 FUT7Q11130 342 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 BAMBIQ13145 260 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 STX3Q13277 289 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 RAPSNQ13702 412 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 APOFQ13790 326 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 DUSP7Q16829 419 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 SLC36A3Q495N2 470 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 ACSF3Q4G176 576 aaPredicted RBP3.52□□□□□ -1.85
HMGB3-203ENST00000430118 FHL5Q5TD97 284 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 SLC35E4Q6ICL7 350 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 PRSS57Q6UWY2 283 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 GDPD4Q6W3E5 623 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 PAQR9Q6ZVX9 377 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 BNIPLQ7Z465 357 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 GOLGA7Q7Z5G4 137 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 C5orf24Q7Z6I8 188 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 ZER1Q7Z7L7 766 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 TMEM150AQ86TG1 271 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 ZNF575Q86XF7 245 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 CACUL1Q86Y37 369 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 STX12Q86Y82 276 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 SLC22A15Q8IZD6 547 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 FAM9CQ8IZT9 166 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 LINC00518Q8N0U6 118 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 CENPSQ8N2Z9 138 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 EID2Q8N6I1 236 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 GVQW1Q8N7I0 195 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 STPG4Q8N801 248 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 TCEANCQ8N8B7 351 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 ZNF680Q8NEM1 530 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 OR5AP2Q8NGF4 316 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 OR4C3Q8NH37 302 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 OR6S1Q8NH40 331 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 TEX47Q8TBZ9 253 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 RDH11Q8TC12 318 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 FANK1Q8TC84 345 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 ADAMTS16Q8TE57 1224 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 NUDCD2Q8WVJ2 157 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 TMEM37Q8WXS4 190 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 PHYHIPQ92561 330 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 MRPL53Q96EL3 112 aaKnown RBP3.52□□□□□ -1.85
HMGB3-203ENST00000430118 RMND5BQ96G75 393 aaPredicted RBP3.52□□□□□ -1.85
HMGB3-203ENST00000430118 THOC3Q96J01 351 aaKnown RBP3.52□□□□□ -1.85
HMGB3-203ENST00000430118 SERPINB12Q96P63 405 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 ERGIC2Q96RQ1 377 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 CYP2S1Q96SQ9 504 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 ECSITQ9BQ95 431 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 ACBD6Q9BR61 282 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 NDUFAF3Q9BU61 184 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 PAPOLGQ9BWT3 736 aaKnown RBP3.52□□□□□ -1.85
HMGB3-203ENST00000430118 BBS2Q9BXC9 721 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 RAB11FIP5Q9BXF6 653 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 MROQ9BYG7 248 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 CXCL16Q9H2A7 254 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 LINC00597Q9H2U6 94 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 MTHFD2LQ9H903 347 aaPredicted RBP3.52□□□□□ -1.85
HMGB3-203ENST00000430118 WDR76Q9H967 626 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 ACTR8Q9H981 624 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 MRM3Q9HC36 420 aaKnown RBP3.52□□□□□ -1.85
HMGB3-203ENST00000430118 ZDHHC4Q9NPG8 344 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 LZTFL1Q9NQ48 299 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 SAR1AQ9NR31 198 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 GCNT4Q9P109 453 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 LHX3Q9UBR4 397 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 SCML1Q9UN30 329 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 DIMT1Q9UNQ2 313 aaKnown RBP3.52□□□□□ -1.85
HMGB3-203ENST00000430118 OR1A2Q9Y585 309 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 MAB21L2Q9Y586 359 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 PTPRDP23468 1912 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 CEP192Q8TEP8 1941 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 PI4KAP42356 2102 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 OBSL1O75147 1896 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 PTPRQQ9UMZ3 2332 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 ZNF638Q14966 1978 aaKnown RBP3.51□□□□□ -1.85
HMGB3-203ENST00000430118 TTC26A0AVF1 554 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 EFCAB10A6NFE3 127 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 TRPC5OSA6NMA1 111 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 SRRM4A7MD48 611 aaKnown RBP3.51□□□□□ -1.85
HMGB3-203ENST00000430118 LMO7DNF2Z398 122 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 H7C0C1 242 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 SURF4O15260 269 aa3.51□□□□□ -1.85
HMGB3-203ENST00000430118 INSIG1O15503 277 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms