RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 GP2P55259 537 aaKnown RBP12.71□□□□□ -0.37
GPNMB-203ENST00000409458 CDH11P55287 796 aa12.71□□□□□ -0.37
GPNMB-203ENST00000409458 FOXK1P85037 733 aa12.71□□□□□ -0.37
GPNMB-203ENST00000409458 AIMP2Q13155 320 aaKnown RBP12.71□□□□□ -0.37
GPNMB-203ENST00000409458 IRF3Q14653 427 aa12.71□□□□□ -0.37
GPNMB-203ENST00000409458 TBCEQ15813 527 aaPredicted RBP12.71□□□□□ -0.37
GPNMB-203ENST00000409458 NXNL2Q5VZ03 156 aa12.71□□□□□ -0.37
GPNMB-203ENST00000409458 PLBD1Q6P4A8 553 aa12.71□□□□□ -0.37
GPNMB-203ENST00000409458 DPY19L2P2Q6ZN68 376 aa12.71□□□□□ -0.37
GPNMB-203ENST00000409458 CPOQ8IVL8 374 aa12.71□□□□□ -0.37
GPNMB-203ENST00000409458 GPALPP1Q8IXQ4 340 aa12.71□□□□□ -0.37
GPNMB-203ENST00000409458 OR5M1Q8NGP8 315 aa12.71□□□□□ -0.37
GPNMB-203ENST00000409458 KATNB1Q9BVA0 655 aa12.71□□□□□ -0.37
GPNMB-203ENST00000409458 HCAR1Q9BXC0 346 aa12.71□□□□□ -0.37
GPNMB-203ENST00000409458 FN3KQ9H479 309 aa12.71□□□□□ -0.37
GPNMB-203ENST00000409458 MED20Q9H944 212 aa12.71□□□□□ -0.37
GPNMB-203ENST00000409458 NRIP3Q9NQ35 241 aa12.71□□□□□ -0.37
GPNMB-203ENST00000409458 KLHL1Q9NR64 748 aa12.71□□□□□ -0.37
GPNMB-203ENST00000409458 COMMD3-BMI1R4GMX3 469 aa12.71□□□□□ -0.37
GPNMB-203ENST00000409458 CNOT1A5YKK6 2376 aaKnown RBP12.71□□□□□ -0.37
GPNMB-203ENST00000409458 FAM186AA6NE01 2351 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 ANKRD33BA6NCL7 494 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 CCDC160A6NGH7 325 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 RIIAD1A6NNX1 92 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 ZNF99A8MXY4 864 aaPredicted RBP12.7□□□□□ -0.38
GPNMB-203ENST00000409458 FAM47E-STBD1D6RA91 191 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 EFNA2O43921 213 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 AHSA1O95433 338 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 MT-ATP6P00846 226 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 LCKP06239 509 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 PEPDP12955 493 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 HIST1H1CP16403 213 aaKnown RBP12.7□□□□□ -0.38
GPNMB-203ENST00000409458 NOS3P29474 1203 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 ERVK-25P63136 954 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 RPL18Q07020 188 aaKnown RBP12.7□□□□□ -0.38
GPNMB-203ENST00000409458 DBPQ10586 325 aaPredicted RBP12.7□□□□□ -0.38
GPNMB-203ENST00000409458 CRMP1Q14194 572 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 ALG10Q5BKT4 473 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 FAM69AQ5T7M9 428 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 NIPAL3Q6P499 406 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 ATP6V1C2Q8NEY4 427 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 OTULINQ96BN8 352 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 SLC25A36Q96CQ1 311 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 LGALS12Q96DT0 336 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 RNFT2Q96EX2 444 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 TMEM41AQ96HV5 264 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 FER1L6-AS2Q96M78 137 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 JSRP1Q96MG2 331 aaPredicted RBP12.7□□□□□ -0.38
GPNMB-203ENST00000409458 PTGES2Q9H7Z7 377 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 STMN3Q9NZ72 180 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 ZNF208O43345 1280 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 SNX4O95219 450 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 APOL3O95236 402 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 PTHP01270 115 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 P04436 131 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 HIST1H2ABP04908 130 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 ADORA3P0DMS8 318 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 ZNF3P17036 446 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 HK1P19367 917 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 DNASE1L1P49184 302 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 CYB561P49447 251 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 RTP5Q14D33 572 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 TMEM44Q2T9K0 475 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 CNPY1Q3B7I2 92 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 UBE2UQ5VVX9 321 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 SLC6A19Q695T7 634 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 C5orf46Q6UWT4 87 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 HIST3H2AQ7L7L0 130 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 MAMDC2Q7Z304 686 aaPredicted RBP12.7□□□□□ -0.38
GPNMB-203ENST00000409458 FAM122BQ7Z309 247 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 CLVS1Q8IUQ0 354 aaPredicted RBP12.7□□□□□ -0.38
GPNMB-203ENST00000409458 GID4Q8IVV7 300 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 CYB561A3Q8NBI2 242 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 CLEC1AQ8NC01 280 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 SLC37A3Q8NCC5 494 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 PSD4Q8NDX1 1056 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 SDR9C7Q8NEX9 313 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 OR52I1Q8NGK6 324 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 OR1J4Q8NGS1 313 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 OR4K13Q8NH42 304 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 RORBQ92753 470 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 HIST1H2ACQ93077 130 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 RASD2Q96D21 266 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 TMEM80Q96HE8 168 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 ARL5BQ96KC2 179 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 GNRHR2Q96P88 292 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 CDCA4Q9BXL8 241 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 SACM1LQ9NTJ5 587 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 MRPS18AQ9NVS2 196 aaKnown RBP12.7□□□□□ -0.38
GPNMB-203ENST00000409458 TEKT2Q9UIF3 430 aa12.7□□□□□ -0.38
GPNMB-203ENST00000409458 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.7□□□□□ -0.38
GPNMB-203ENST00000409458 TEX13CA0A0J9YWL9 993 aa12.69□□□□□ -0.38
GPNMB-203ENST00000409458 ARGFXA6NJG6 315 aa12.69□□□□□ -0.38
GPNMB-203ENST00000409458 SNTNA6NMZ2 147 aa12.69□□□□□ -0.38
GPNMB-203ENST00000409458 FTCDNL1E5RQL4 147 aa12.69□□□□□ -0.38
GPNMB-203ENST00000409458 PRR23D1E9PI22 279 aaPredicted RBP12.69□□□□□ -0.38
GPNMB-203ENST00000409458 H3BML4 177 aa12.69□□□□□ -0.38
GPNMB-203ENST00000409458 GFRA3O60609 400 aa12.69□□□□□ -0.38
GPNMB-203ENST00000409458 TRIM3O75382 744 aaPredicted RBP12.69□□□□□ -0.38
GPNMB-203ENST00000409458 IFNGP01579 166 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms