RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 OTUD3Q5T2D3 398 aaPredicted RBP19.3■□□□□ 0.68
CLN3-207ENST00000395653 FAM69AQ5T7M9 428 aa19.3■□□□□ 0.68
CLN3-207ENST00000395653 BEND4Q6ZU67 534 aa19.3■□□□□ 0.68
CLN3-207ENST00000395653 GALNT5Q7Z7M9 940 aa19.3■□□□□ 0.68
CLN3-207ENST00000395653 ZNF295-AS1Q8N0V1 137 aa19.3■□□□□ 0.68
CLN3-207ENST00000395653 KTI12Q96EK9 354 aaPredicted RBP19.3■□□□□ 0.68
CLN3-207ENST00000395653 NSL1Q96IY1 281 aa19.3■□□□□ 0.68
CLN3-207ENST00000395653 TMEM43Q9BTV4 400 aa19.3■□□□□ 0.68
CLN3-207ENST00000395653 POLR2J2Q9GZM3 115 aaKnown RBP19.3■□□□□ 0.68
CLN3-207ENST00000395653 POLR2J3Q9H1A7 115 aaKnown RBP19.3■□□□□ 0.68
CLN3-207ENST00000395653 FANCFQ9NPI8 374 aa19.3■□□□□ 0.68
CLN3-207ENST00000395653 TRAV36DV7A0A075B6V5 113 aa19.29■□□□□ 0.68
CLN3-207ENST00000395653 TRAPPC13A5PLN9 417 aa19.29■□□□□ 0.68
CLN3-207ENST00000395653 TUBAL3A6NHL2 446 aa19.29■□□□□ 0.68
CLN3-207ENST00000395653 AQP7P3A6NL99 342 aa19.29■□□□□ 0.68
CLN3-207ENST00000395653 AKR7A3O95154 331 aa19.29■□□□□ 0.68
CLN3-207ENST00000395653 TNFRSF1BP20333 461 aa19.29■□□□□ 0.68
CLN3-207ENST00000395653 RPS5P46782 204 aaKnown RBP19.29■□□□□ 0.68
CLN3-207ENST00000395653 FAM27E3Q08E93 113 aa19.29■□□□□ 0.68
CLN3-207ENST00000395653 SAMD4BQ5PRF9 694 aaKnown RBP19.29■□□□□ 0.68
CLN3-207ENST00000395653 TFAP2EQ6VUC0 442 aa19.29■□□□□ 0.68
CLN3-207ENST00000395653 LINC00114Q6XXX2 140 aa19.29■□□□□ 0.68
CLN3-207ENST00000395653 CBLL1Q75N03 491 aa19.29■□□□□ 0.68
CLN3-207ENST00000395653 TSPYL5Q86VY4 417 aaPredicted RBP19.29■□□□□ 0.68
CLN3-207ENST00000395653 TMEM99Q8N816 258 aa19.29■□□□□ 0.68
CLN3-207ENST00000395653 OR6S1Q8NH40 331 aa19.29■□□□□ 0.68
CLN3-207ENST00000395653 TPD52L3Q96J77 140 aa19.29■□□□□ 0.68
CLN3-207ENST00000395653 EPYCQ99645 322 aa19.29■□□□□ 0.68
CLN3-207ENST00000395653 CRIM1Q9NZV1 1036 aa19.29■□□□□ 0.68
CLN3-207ENST00000395653 LYPD3O95274 346 aa19.28■□□□□ 0.68
CLN3-207ENST00000395653 THY1P04216 161 aa19.28■□□□□ 0.68
CLN3-207ENST00000395653 HSD17B1P14061 328 aa19.28■□□□□ 0.68
CLN3-207ENST00000395653 PRF1P14222 555 aa19.28■□□□□ 0.68
CLN3-207ENST00000395653 CALB2P22676 271 aa19.28■□□□□ 0.68
CLN3-207ENST00000395653 OR3A2P47893 321 aa19.28■□□□□ 0.68
CLN3-207ENST00000395653 FXNQ16595 210 aa19.28■□□□□ 0.68
CLN3-207ENST00000395653 RNF148Q8N7C7 305 aa19.28■□□□□ 0.68
CLN3-207ENST00000395653 FAM222BQ8WU58 562 aa19.28■□□□□ 0.68
CLN3-207ENST00000395653 TAAR8Q969N4 342 aa19.28■□□□□ 0.68
CLN3-207ENST00000395653 MPP4Q96JB8 637 aa19.28■□□□□ 0.68
CLN3-207ENST00000395653 SF3B5Q9BWJ5 86 aaKnown RBP19.28■□□□□ 0.68
CLN3-207ENST00000395653 CYSRT1A8MQ03 144 aa19.27■□□□□ 0.68
CLN3-207ENST00000395653 VAMP5O95183 116 aa19.27■□□□□ 0.68
CLN3-207ENST00000395653 NCK1P16333 377 aa19.27■□□□□ 0.68
CLN3-207ENST00000395653 GTF2E2P29084 291 aaKnown RBP19.27■□□□□ 0.68
CLN3-207ENST00000395653 SSTR2P30874 369 aa19.27■□□□□ 0.68
CLN3-207ENST00000395653 UGT2B10P36537 528 aa19.27■□□□□ 0.68
CLN3-207ENST00000395653 OR1E2P47887 323 aa19.27■□□□□ 0.68
CLN3-207ENST00000395653 P2RY4P51582 365 aa19.27■□□□□ 0.68
CLN3-207ENST00000395653 SLC17A1Q14916 467 aa19.27■□□□□ 0.68
CLN3-207ENST00000395653 EXOC3L2Q2M3D2 409 aa19.27■□□□□ 0.68
CLN3-207ENST00000395653 SPATS1Q496A3 300 aa19.27■□□□□ 0.68
CLN3-207ENST00000395653 DEF8Q6ZN54 512 aa19.27■□□□□ 0.68
CLN3-207ENST00000395653 DEFB107AQ8IZN7 70 aa19.27■□□□□ 0.68
CLN3-207ENST00000395653 FAM162AQ96A26 154 aa19.27■□□□□ 0.68
CLN3-207ENST00000395653 ZNF775Q96BV0 537 aaPredicted RBP19.27■□□□□ 0.68
CLN3-207ENST00000395653 SLC25A36Q96CQ1 311 aa19.27■□□□□ 0.68
CLN3-207ENST00000395653 CDRT15Q96T59 188 aa19.27■□□□□ 0.68
CLN3-207ENST00000395653 EGFL7Q9UHF1 273 aa19.27■□□□□ 0.68
CLN3-207ENST00000395653 SLC7A7Q9UM01 511 aa19.27■□□□□ 0.68
CLN3-207ENST00000395653 NOSIPQ9Y314 301 aaKnown RBP19.27■□□□□ 0.68
CLN3-207ENST00000395653 MPDZO75970 2070 aa19.27■□□□□ 0.68
CLN3-207ENST00000395653 ITPR2Q14571 2701 aa19.27■□□□□ 0.67
CLN3-207ENST00000395653 B2RBV5 119 aa19.26■□□□□ 0.67
CLN3-207ENST00000395653 C16orf97H3BN30 126 aa19.26■□□□□ 0.67
CLN3-207ENST00000395653 OR5F1O95221 314 aa19.26■□□□□ 0.67
CLN3-207ENST00000395653 ZNF682O95780 498 aa19.26■□□□□ 0.67
CLN3-207ENST00000395653 SERPINA1P01009 418 aa19.26■□□□□ 0.67
CLN3-207ENST00000395653 CCKARP32238 428 aa19.26■□□□□ 0.67
CLN3-207ENST00000395653 MFSD13AQ14CX5 517 aa19.26■□□□□ 0.67
CLN3-207ENST00000395653 GLYATQ6IB77 296 aa19.26■□□□□ 0.67
CLN3-207ENST00000395653 P3H2Q8IVL5 708 aa19.26■□□□□ 0.67
CLN3-207ENST00000395653 SLC41A3Q96GZ6 507 aa19.26■□□□□ 0.67
CLN3-207ENST00000395653 ZNF426Q9BUY5 554 aa19.26■□□□□ 0.67
CLN3-207ENST00000395653 CD300AQ9UGN4 299 aa19.26■□□□□ 0.67
CLN3-207ENST00000395653 RPS6KA6Q9UK32 745 aa19.26■□□□□ 0.67
CLN3-207ENST00000395653 FLVCR1Q9Y5Y0 555 aa19.26■□□□□ 0.67
CLN3-207ENST00000395653 DCHS2Q6V1P9 2916 aa19.26■□□□□ 0.67
CLN3-207ENST00000395653 GMNNO75496 209 aa19.25■□□□□ 0.67
CLN3-207ENST00000395653 TAS2R41P59536 307 aa19.25■□□□□ 0.67
CLN3-207ENST00000395653 IFI44LQ53G44 452 aa19.25■□□□□ 0.67
CLN3-207ENST00000395653 TMEM225Q6GV28 225 aa19.25■□□□□ 0.67
CLN3-207ENST00000395653 WDR88Q6ZMY6 472 aa19.25■□□□□ 0.67
CLN3-207ENST00000395653 VTCN1Q7Z7D3 282 aa19.25■□□□□ 0.67
CLN3-207ENST00000395653 GABRG1Q8N1C3 465 aa19.25■□□□□ 0.67
CLN3-207ENST00000395653 FAM156AQ8NDB6 213 aa19.25■□□□□ 0.67
CLN3-207ENST00000395653 OR9K2Q8NGE7 335 aa19.25■□□□□ 0.67
CLN3-207ENST00000395653 LINC01560Q8TB33 94 aa19.25■□□□□ 0.67
CLN3-207ENST00000395653 GEMIN6Q8WXD5 167 aaKnown RBP19.25■□□□□ 0.67
CLN3-207ENST00000395653 DACH2Q96NX9 599 aa19.25■□□□□ 0.67
CLN3-207ENST00000395653 PRSS27Q9BQR3 290 aa19.25■□□□□ 0.67
CLN3-207ENST00000395653 SLC19A3Q9BZV2 496 aa19.25■□□□□ 0.67
CLN3-207ENST00000395653 NDRG3Q9UGV2 375 aa19.25■□□□□ 0.67
CLN3-207ENST00000395653 MAGEL2Q9UJ55 1249 aa19.25■□□□□ 0.67
CLN3-207ENST00000395653 RASD1Q9Y272 281 aa19.25■□□□□ 0.67
CLN3-207ENST00000395653 CNOT4O95628 575 aaKnown RBP19.25■□□□□ 0.67
CLN3-207ENST00000395653 T-ENOLP0DO92 83 aa19.25■□□□□ 0.67
CLN3-207ENST00000395653 THRBP10828 461 aa19.25■□□□□ 0.67
CLN3-207ENST00000395653 EPXP11678 715 aa19.25■□□□□ 0.67
CLN3-207ENST00000395653 TLE4Q04727 773 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms