RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 PPP1R3DO95685 299 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 MRPL3P09001 348 aaKnown RBP8.88□□□□□ -0.99
COL6A3-204ENST00000392003 CSF3P09919 207 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 GAAP10253 952 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 PRKAR1AP10644 381 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 RBM34P42696 430 aaKnown RBP8.88□□□□□ -0.99
COL6A3-204ENST00000392003 MEOX2P50222 304 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 PPP1CAP62136 330 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 ACTC1P68032 377 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 ACTA1P68133 377 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 FZD2Q14332 565 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 EXOSC6Q5RKV6 272 aaKnown RBP8.88□□□□□ -0.99
COL6A3-204ENST00000392003 SLC6A19Q695T7 634 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 PLET1Q6UQ28 207 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 SLC22A18ASQ8N1D0 253 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 SLC43A2Q8N370 569 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 FAM98AQ8NCA5 519 aaKnown RBP8.88□□□□□ -0.99
COL6A3-204ENST00000392003 CTHRC1Q96CG8 243 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 PEX11GQ96HA9 241 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 PTCHD1Q96NR3 888 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 TEAD3Q99594 435 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 G6PC3Q9BUM1 346 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 TWSG1Q9GZX9 223 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 J3QLW9 94 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 SRPX2O60687 465 aaPredicted RBP8.87□□□□□ -0.99
COL6A3-204ENST00000392003 TSC22D2O75157 780 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 ZNF19P17023 458 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 CD38P28907 300 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 HTR3AP46098 478 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 RPS5P46782 204 aaKnown RBP8.87□□□□□ -0.99
COL6A3-204ENST00000392003 MAZP56270 477 aaKnown RBP8.87□□□□□ -0.99
COL6A3-204ENST00000392003 CTBP2P56545 445 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 CRYZQ08257 329 aaKnown RBP8.87□□□□□ -0.99
COL6A3-204ENST00000392003 LGALS3BPQ08380 585 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 POU4F2Q12837 409 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 ZNF273Q14593 569 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 TUSC1Q2TAM9 212 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 IDNKQ5T6J7 187 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 THSD4Q6ZMP0 1018 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 ZAR1Q86SH2 424 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 STX12Q86Y82 276 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 Q8N402 240 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 AVL9Q8NBF6 648 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 OR5W2Q8NH69 310 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 ADAMTS18Q8TE60 1221 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 ZNF416Q9BWM5 594 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 ISG20L2Q9H9L3 353 aaKnown RBP8.87□□□□□ -0.99
COL6A3-204ENST00000392003 HPF1Q9NWY4 346 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 CABIN1Q9Y6J0 2220 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 A0A0B4J2E0 115 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 A0A1B0GTQ1 180 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 A0A1B0GX12 115 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 BLACEA4D250 179 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 PRAMEF2O60811 474 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 CTNSO60931 367 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 NCR1O76036 304 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 CD63P08962 238 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 COX5BP10606 129 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 PEPDP12955 493 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 PTBP1P26599 531 aaKnown RBP eCLIP8.87□□□□□ -0.99
COL6A3-204ENST00000392003 SSTR4P31391 388 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 RPL4P36578 427 aaKnown RBP8.87□□□□□ -0.99
COL6A3-204ENST00000392003 MTNR1BP49286 362 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 GAS6Q14393 721 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 KRT74Q7RTS7 529 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 SLC16A13Q7RTY0 426 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 GKN2Q86XP6 184 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 ARIH2OSQ8N7S6 290 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 CYB561A3Q8NBI2 242 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 OR4D10Q8NGI6 311 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 MRPL48Q96GC5 212 aaKnown RBP8.87□□□□□ -0.99
COL6A3-204ENST00000392003 ERMAPQ96PL5 475 aaPredicted RBP8.87□□□□□ -0.99
COL6A3-204ENST00000392003 TNFRSF13CQ96RJ3 184 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 ENKD1Q9H0I2 346 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 FAM60AQ9NP50 221 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 C2orf42Q9NWW7 574 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 ASH2LQ9UBL3 628 aa8.87□□□□□ -0.99
COL6A3-204ENST00000392003 MEIOCA2RUB1 952 aa8.86□□□□□ -0.99
COL6A3-204ENST00000392003 GNB5O14775 395 aa8.86□□□□□ -0.99
COL6A3-204ENST00000392003 SDC3O75056 442 aa8.86□□□□□ -0.99
COL6A3-204ENST00000392003 CDC123O75794 336 aaPredicted RBP8.86□□□□□ -0.99
COL6A3-204ENST00000392003 APOC1P02654 83 aa8.86□□□□□ -0.99
COL6A3-204ENST00000392003 TBXA2RP21731 343 aa8.86□□□□□ -0.99
COL6A3-204ENST00000392003 APEX1P27695 318 aaKnown RBP8.86□□□□□ -0.99
COL6A3-204ENST00000392003 MAP3K8P41279 467 aa8.86□□□□□ -0.99
COL6A3-204ENST00000392003 MAP2K3P46734 347 aa8.86□□□□□ -0.99
COL6A3-204ENST00000392003 RFX2P48378 723 aa8.86□□□□□ -0.99
COL6A3-204ENST00000392003 GPR143P51810 404 aa8.86□□□□□ -0.99
COL6A3-204ENST00000392003 PGDP52209 483 aa8.86□□□□□ -0.99
COL6A3-204ENST00000392003 SLC3A1Q07837 685 aa8.86□□□□□ -0.99
COL6A3-204ENST00000392003 CRMP1Q14194 572 aa8.86□□□□□ -0.99
COL6A3-204ENST00000392003 SMAD2Q15796 467 aaKnown RBP8.86□□□□□ -0.99
COL6A3-204ENST00000392003 ZNF57Q68EA5 555 aaPredicted RBP8.86□□□□□ -0.99
COL6A3-204ENST00000392003 ULK3Q6PHR2 472 aa8.86□□□□□ -0.99
COL6A3-204ENST00000392003 ZNF595Q8IYB9 648 aa8.86□□□□□ -0.99
COL6A3-204ENST00000392003 UBE2J2Q8N2K1 259 aa8.86□□□□□ -0.99
COL6A3-204ENST00000392003 ATOH1Q92858 354 aaPredicted RBP8.86□□□□□ -0.99
COL6A3-204ENST00000392003 KLHL15Q96M94 604 aa8.86□□□□□ -0.99
COL6A3-204ENST00000392003 FRMD6Q96NE9 622 aa8.86□□□□□ -0.99
COL6A3-204ENST00000392003 ATF6BQ99941 703 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms