RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 VN1R1Q9GZP7 353 aa13.09□□□□□ -0.31
HMGA1-203ENST00000374116 SAP130Q9H0E3 1048 aa13.09□□□□□ -0.31
HMGA1-203ENST00000374116 MMP28Q9H239 520 aa13.09□□□□□ -0.31
HMGA1-203ENST00000374116 PIGUQ9H490 435 aa13.09□□□□□ -0.31
HMGA1-203ENST00000374116 RNF167Q9H6Y7 350 aa13.09□□□□□ -0.31
HMGA1-203ENST00000374116 LANCL2Q9NS86 450 aa13.09□□□□□ -0.31
HMGA1-203ENST00000374116 MRPS18AQ9NVS2 196 aaKnown RBP13.09□□□□□ -0.31
HMGA1-203ENST00000374116 TESQ9UGI8 421 aaKnown RBP13.09□□□□□ -0.31
HMGA1-203ENST00000374116 ZMIZ1Q9ULJ6 1067 aa13.09□□□□□ -0.31
HMGA1-203ENST00000374116 DSPP15924 2871 aaKnown RBP13.08□□□□□ -0.31
HMGA1-203ENST00000374116 IGLV3-12A0A075B6K2 115 aa13.08□□□□□ -0.32
HMGA1-203ENST00000374116 IGHV3-20A0A0C4DH32 117 aa13.08□□□□□ -0.32
HMGA1-203ENST00000374116 IDSB3KWA1 339 aa13.08□□□□□ -0.32
HMGA1-203ENST00000374116 C21orf140B9A014 251 aa13.08□□□□□ -0.32
HMGA1-203ENST00000374116 ALOX12BO75342 701 aa13.08□□□□□ -0.32
HMGA1-203ENST00000374116 HLA-DQB1P01920 261 aa13.08□□□□□ -0.32
HMGA1-203ENST00000374116 HEXBP07686 556 aa13.08□□□□□ -0.32
HMGA1-203ENST00000374116 ACP2P11117 423 aa13.08□□□□□ -0.32
HMGA1-203ENST00000374116 RNH1P13489 461 aaKnown RBP13.08□□□□□ -0.32
HMGA1-203ENST00000374116 FOLR3P41439 243 aa13.08□□□□□ -0.32
HMGA1-203ENST00000374116 OMPP47874 163 aa13.08□□□□□ -0.32
HMGA1-203ENST00000374116 RAB38P57729 211 aa13.08□□□□□ -0.32
HMGA1-203ENST00000374116 SKP1P63208 163 aa13.08□□□□□ -0.32
HMGA1-203ENST00000374116 TLE3Q04726 772 aa13.08□□□□□ -0.32
HMGA1-203ENST00000374116 DUSP5Q16690 384 aa13.08□□□□□ -0.32
HMGA1-203ENST00000374116 PRICKLE4Q2TBC4 344 aa13.08□□□□□ -0.32
HMGA1-203ENST00000374116 OR2Y1Q8NGV0 311 aa13.08□□□□□ -0.32
HMGA1-203ENST00000374116 HOXB13Q92826 284 aaPredicted RBP13.08□□□□□ -0.32
HMGA1-203ENST00000374116 SLC38A2Q96QD8 506 aa13.08□□□□□ -0.32
HMGA1-203ENST00000374116 SDF2Q99470 211 aa13.08□□□□□ -0.32
HMGA1-203ENST00000374116 PLA2G12AQ9BZM1 189 aa13.08□□□□□ -0.32
HMGA1-203ENST00000374116 POLR2J2Q9GZM3 115 aaKnown RBP13.08□□□□□ -0.32
HMGA1-203ENST00000374116 SLC26A1Q9H2B4 701 aa13.08□□□□□ -0.32
HMGA1-203ENST00000374116 EGLN3Q9H6Z9 239 aa13.08□□□□□ -0.32
HMGA1-203ENST00000374116 HHATLQ9HCP6 504 aa13.08□□□□□ -0.32
HMGA1-203ENST00000374116 ING3Q9NXR8 418 aa13.08□□□□□ -0.32
HMGA1-203ENST00000374116 CLEC2DQ9UHP7 191 aa13.08□□□□□ -0.32
HMGA1-203ENST00000374116 TEKT2Q9UIF3 430 aa13.08□□□□□ -0.32
HMGA1-203ENST00000374116 TGFBR3LH3BV60 316 aa13.07□□□□□ -0.32
HMGA1-203ENST00000374116 MYL12BO14950 172 aa13.07□□□□□ -0.32
HMGA1-203ENST00000374116 RAB40ALP0C0E4 278 aa13.07□□□□□ -0.32
HMGA1-203ENST00000374116 FPR3P25089 353 aa13.07□□□□□ -0.32
HMGA1-203ENST00000374116 MLLT11Q13015 90 aaPredicted RBP13.07□□□□□ -0.32
HMGA1-203ENST00000374116 SOWAHCQ53LP3 525 aaPredicted RBP13.07□□□□□ -0.32
HMGA1-203ENST00000374116 ZNF836Q6ZNA1 936 aa13.07□□□□□ -0.32
HMGA1-203ENST00000374116 GDF7Q7Z4P5 450 aa13.07□□□□□ -0.32
HMGA1-203ENST00000374116 BCDIN3DQ7Z5W3 292 aaKnown RBP13.07□□□□□ -0.32
HMGA1-203ENST00000374116 CDRT4Q8N9R6 151 aa13.07□□□□□ -0.32
HMGA1-203ENST00000374116 OR52I1Q8NGK6 324 aa13.07□□□□□ -0.32
HMGA1-203ENST00000374116 DOK4Q8TEW6 326 aa13.07□□□□□ -0.32
HMGA1-203ENST00000374116 GIMAP1Q8WWP7 306 aa13.07□□□□□ -0.32
HMGA1-203ENST00000374116 PMM1Q92871 262 aa13.07□□□□□ -0.32
HMGA1-203ENST00000374116 OSTF1Q92882 214 aa13.07□□□□□ -0.32
HMGA1-203ENST00000374116 SLC41A3Q96GZ6 507 aa13.07□□□□□ -0.32
HMGA1-203ENST00000374116 HYLS1Q96M11 299 aa13.07□□□□□ -0.32
HMGA1-203ENST00000374116 GPR137Q96N19 417 aa13.07□□□□□ -0.32
HMGA1-203ENST00000374116 STACQ99469 402 aa13.07□□□□□ -0.32
HMGA1-203ENST00000374116 TEX12Q9BXU0 123 aa13.07□□□□□ -0.32
HMGA1-203ENST00000374116 GPR87Q9BY21 358 aa13.07□□□□□ -0.32
HMGA1-203ENST00000374116 DPH1Q9BZG8 443 aa13.07□□□□□ -0.32
HMGA1-203ENST00000374116 C11orf54Q9H0W9 315 aaPredicted RBP13.07□□□□□ -0.32
HMGA1-203ENST00000374116 SEC14L4Q9UDX3 406 aa13.07□□□□□ -0.32
HMGA1-203ENST00000374116 STUB1Q9UNE7 303 aa13.07□□□□□ -0.32
HMGA1-203ENST00000374116 CACNA1BQ00975 2339 aa13.07□□□□□ -0.32
HMGA1-203ENST00000374116 PRODHO43272 600 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 NDUFA2O43678 99 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 SLC22A5O76082 557 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 DBIP07108 87 aaKnown RBP13.06□□□□□ -0.32
HMGA1-203ENST00000374116 EMP2P54851 167 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 EEF1A1P68104 462 aaKnown RBP13.06□□□□□ -0.32
HMGA1-203ENST00000374116 POU6F2P78424 691 aaPredicted RBP13.06□□□□□ -0.32
HMGA1-203ENST00000374116 RAB40BQ12829 278 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 PXDC1Q5TGL8 231 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 NUP210LQ5VU65 1888 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 LRRC69Q6ZNQ3 347 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 MBOAT2Q6ZWT7 520 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 GPALPP1Q8IXQ4 340 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 ZNF619Q8N2I2 560 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 OR9Q1Q8NGQ5 310 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 GPR151Q8TDV0 419 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 FAM46AQ96IP4 442 aaKnown RBP13.06□□□□□ -0.32
HMGA1-203ENST00000374116 PTCHD1Q96NR3 888 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 DCLRE1CQ96SD1 692 aaKnown RBP13.06□□□□□ -0.32
HMGA1-203ENST00000374116 KCNS3Q9BQ31 491 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 TGIF2Q9GZN2 237 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 ZNF350Q9GZX5 532 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 FGF20Q9NP95 211 aaPredicted RBP13.06□□□□□ -0.32
HMGA1-203ENST00000374116 KRCC1Q9NPI7 259 aaPredicted RBP13.06□□□□□ -0.32
HMGA1-203ENST00000374116 DUSP22Q9NRW4 184 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 NDUFB11Q9NX14 153 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 CNIH4Q9P003 139 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 CMAHPQ9Y471 501 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 CDC14CA4D256 554 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 A8MUA0 341 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 TFECO14948 347 aaPredicted RBP13.06□□□□□ -0.32
HMGA1-203ENST00000374116 STX11O75558 287 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 GPX5O75715 221 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 AK1P00568 194 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 RPS4Y1P22090 263 aaKnown RBP13.06□□□□□ -0.32
HMGA1-203ENST00000374116 PSMA1P25786 263 aaKnown RBP13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms