RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 OR7A5Q15622 319 aa14.03□□□□□ -0.16
CLN3-201ENST00000333496 CCDC80Q76M96 950 aa14.03□□□□□ -0.16
CLN3-201ENST00000333496 SLC30A8Q8IWU4 369 aa14.03□□□□□ -0.16
CLN3-201ENST00000333496 OR52E4Q8NGH9 312 aa14.03□□□□□ -0.16
CLN3-201ENST00000333496 PIGXQ8TBF5 258 aa14.03□□□□□ -0.16
CLN3-201ENST00000333496 CMTM5Q96DZ9 223 aa14.03□□□□□ -0.16
CLN3-201ENST00000333496 GID8Q9NWU2 228 aa14.03□□□□□ -0.16
CLN3-201ENST00000333496 TESQ9UGI8 421 aaKnown RBP14.03□□□□□ -0.16
CLN3-201ENST00000333496 PRSS50Q9UI38 385 aa14.03□□□□□ -0.16
CLN3-201ENST00000333496 A0A1W2PPR1 153 aa14.02□□□□□ -0.16
CLN3-201ENST00000333496 M0R3H8 397 aa14.02□□□□□ -0.16
CLN3-201ENST00000333496 EIF1BO60739 113 aaKnown RBP14.02□□□□□ -0.16
CLN3-201ENST00000333496 AKR7A3O95154 331 aa14.02□□□□□ -0.16
CLN3-201ENST00000333496 HRGP04196 525 aa14.02□□□□□ -0.16
CLN3-201ENST00000333496 GPIP06744 558 aa14.02□□□□□ -0.16
CLN3-201ENST00000333496 THBDP07204 575 aa14.02□□□□□ -0.16
CLN3-201ENST00000333496 PSMB1P20618 241 aaKnown RBP14.02□□□□□ -0.16
CLN3-201ENST00000333496 CD247P20963 164 aa14.02□□□□□ -0.16
CLN3-201ENST00000333496 NRF1Q16656 503 aa14.02□□□□□ -0.16
CLN3-201ENST00000333496 C1orf140Q5VVS0 124 aa14.02□□□□□ -0.16
CLN3-201ENST00000333496 PAQR6Q6TCH4 344 aa14.02□□□□□ -0.16
CLN3-201ENST00000333496 GALNT5Q7Z7M9 940 aa14.02□□□□□ -0.16
CLN3-201ENST00000333496 PATL1Q86TB9 770 aaKnown RBP14.02□□□□□ -0.16
CLN3-201ENST00000333496 CXorf67Q86X51 503 aaPredicted RBP14.02□□□□□ -0.16
CLN3-201ENST00000333496 CDC20BQ86Y33 519 aa14.02□□□□□ -0.16
CLN3-201ENST00000333496 TMEM99Q8N816 258 aa14.02□□□□□ -0.16
CLN3-201ENST00000333496 OR4D11Q8NGI4 311 aa14.02□□□□□ -0.16
CLN3-201ENST00000333496 STK35Q8TDR2 534 aa14.02□□□□□ -0.16
CLN3-201ENST00000333496 ARHGDIGQ99819 225 aa14.02□□□□□ -0.16
CLN3-201ENST00000333496 MED18Q9BUE0 208 aa14.02□□□□□ -0.16
CLN3-201ENST00000333496 PTDSS2Q9BVG9 487 aa14.02□□□□□ -0.16
CLN3-201ENST00000333496 TRIM2Q9C040 744 aa14.02□□□□□ -0.16
CLN3-201ENST00000333496 LIME1Q9H400 295 aa14.02□□□□□ -0.16
CLN3-201ENST00000333496 C12orf10Q9HB07 376 aa14.02□□□□□ -0.16
CLN3-201ENST00000333496 VPS13CQ709C8 3753 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 C8BP07358 591 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 P2RY4P51582 365 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 SLC17A1Q14916 467 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 POU4F3Q15319 338 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 OR1Q1Q15612 314 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 TSC22D1Q15714 1073 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 NPTX1Q15818 432 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 INTS11Q5TA45 600 aaKnown RBP14.01□□□□□ -0.17
CLN3-201ENST00000333496 DNAJA4Q8WW22 397 aaPredicted RBP14.01□□□□□ -0.17
CLN3-201ENST00000333496 SLC38A4Q969I6 547 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 MCUR1Q96AQ8 359 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 ZC3HAV1LQ96H79 300 aaKnown RBP14.01□□□□□ -0.17
CLN3-201ENST00000333496 NAA11Q9BSU3 229 aaPredicted RBP14.01□□□□□ -0.17
CLN3-201ENST00000333496 DCLRE1BQ9H816 532 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 BATF3Q9NR55 127 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 C6orf203Q9P0P8 240 aaPredicted RBP14.01□□□□□ -0.17
CLN3-201ENST00000333496 RPS6KB2Q9UBS0 482 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 MYO9AB2RTY4 2548 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 IGKV1D-42A0A075B6H8 117 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 A0A0B4J2E0 115 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 A0A1B0GX12 115 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 ELOA3DA6NLF2 546 aaPredicted RBP14.01□□□□□ -0.17
CLN3-201ENST00000333496 DEFB108AA8MXU0 73 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 B2RBV5 119 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 FTCDNL1E5RQL4 147 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 AIM2O14862 343 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 CASKO14936 926 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 GYG2O15488 501 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 GOSR1O95249 250 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 ADAP00813 363 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 CRYGSP22914 178 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 VEZF1Q14119 521 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 ELOA3BQ3SY89 546 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 ALG10BQ5I7T1 473 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 OTUD3Q5T2D3 398 aaPredicted RBP14.01□□□□□ -0.17
CLN3-201ENST00000333496 SFRP5Q5T4F7 317 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 C8orf82Q6P1X6 216 aaPredicted RBP14.01□□□□□ -0.17
CLN3-201ENST00000333496 ULK3Q6PHR2 472 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 RINLQ6ZS11 566 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 Q6ZT83 130 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 CDH24Q86UP0 819 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 RBM45Q8IUH3 476 aaKnown RBP14.01□□□□□ -0.17
CLN3-201ENST00000333496 ELOA3Q8NG57 546 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 OR6T1Q8NGN1 323 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 KTI12Q96EK9 354 aaPredicted RBP14.01□□□□□ -0.17
CLN3-201ENST00000333496 EVA1AQ9H8M9 152 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 ADPRHL2Q9NX46 363 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 CMTM6Q9NX76 183 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 EMC3Q9P0I2 261 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 GMPR2Q9P2T1 348 aaKnown RBP14.01□□□□□ -0.17
CLN3-201ENST00000333496 SLC13A4Q9UKG4 626 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 GPR52Q9Y2T5 361 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 NOSIPQ9Y314 301 aaKnown RBP14.01□□□□□ -0.17
CLN3-201ENST00000333496 FLVCR1Q9Y5Y0 555 aa14.01□□□□□ -0.17
CLN3-201ENST00000333496 RAI1Q7Z5J4 1906 aaPredicted RBP14□□□□□ -0.17
CLN3-201ENST00000333496 AQP7P3A6NL99 342 aa14□□□□□ -0.17
CLN3-201ENST00000333496 GPR171O14626 319 aa14□□□□□ -0.17
CLN3-201ENST00000333496 FZD7O75084 574 aa14□□□□□ -0.17
CLN3-201ENST00000333496 RPS5P46782 204 aaKnown RBP14□□□□□ -0.17
CLN3-201ENST00000333496 TSPYL5Q86VY4 417 aaPredicted RBP14□□□□□ -0.17
CLN3-201ENST00000333496 SLC15A3Q8IY34 581 aa14□□□□□ -0.17
CLN3-201ENST00000333496 MFSD8Q8NHS3 518 aa14□□□□□ -0.17
CLN3-201ENST00000333496 MCHR1Q99705 422 aa14□□□□□ -0.17
CLN3-201ENST00000333496 TAPBPLQ9BX59 468 aa14□□□□□ -0.17
CLN3-201ENST00000333496 CADM1Q9BY67 442 aaKnown RBP14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms