RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 C6orf52Q5T4I8 152 aa11.18□□□□□ -0.62
CD44-203ENST00000278386 AP1ARQ63HQ0 302 aa11.18□□□□□ -0.62
CD44-203ENST00000278386 AAED1Q7RTV5 226 aa11.18□□□□□ -0.62
CD44-203ENST00000278386 ABHD12BQ7Z5M8 362 aaPredicted RBP11.18□□□□□ -0.62
CD44-203ENST00000278386 HIPK1Q86Z02 1210 aa11.18□□□□□ -0.62
CD44-203ENST00000278386 TMEM99Q8N816 258 aa11.18□□□□□ -0.62
CD44-203ENST00000278386 WDR31Q8NA23 367 aa11.18□□□□□ -0.62
CD44-203ENST00000278386 OR52P1PQ8NH57 321 aa11.18□□□□□ -0.62
CD44-203ENST00000278386 TMEM45BQ96B21 275 aa11.18□□□□□ -0.62
CD44-203ENST00000278386 ALKBH3Q96Q83 286 aaPredicted RBP11.18□□□□□ -0.62
CD44-203ENST00000278386 KCNS3Q9BQ31 491 aa11.18□□□□□ -0.62
CD44-203ENST00000278386 WDR55Q9H6Y2 383 aaPredicted RBP11.18□□□□□ -0.62
CD44-203ENST00000278386 RLIMQ9NVW2 624 aa11.18□□□□□ -0.62
CD44-203ENST00000278386 CALML5Q9NZT1 146 aa11.18□□□□□ -0.62
CD44-203ENST00000278386 ZNF443Q9Y2A4 671 aaPredicted RBP11.18□□□□□ -0.62
CD44-203ENST00000278386 A0A096LNT2 108 aa11.17□□□□□ -0.62
CD44-203ENST00000278386 TMEM247A6NEH6 219 aa11.17□□□□□ -0.62
CD44-203ENST00000278386 LIPT2A6NK58 231 aa11.17□□□□□ -0.62
CD44-203ENST00000278386 AQP7P3A6NL99 342 aa11.17□□□□□ -0.62
CD44-203ENST00000278386 TRPC5OSA6NMA1 111 aa11.17□□□□□ -0.62
CD44-203ENST00000278386 HDAC3O15379 428 aa11.17□□□□□ -0.62
CD44-203ENST00000278386 FRS3O43559 492 aa11.17□□□□□ -0.62
CD44-203ENST00000278386 CSF3P09919 207 aa11.17□□□□□ -0.62
CD44-203ENST00000278386 ETFAP13804 333 aa11.17□□□□□ -0.62
CD44-203ENST00000278386 IDO1P14902 403 aa11.17□□□□□ -0.62
CD44-203ENST00000278386 CRISP3P54108 245 aa11.17□□□□□ -0.62
CD44-203ENST00000278386 PRPS1P60891 318 aa11.17□□□□□ -0.62
CD44-203ENST00000278386 DSTNP60981 165 aa11.17□□□□□ -0.62
CD44-203ENST00000278386 BNIP2Q12982 314 aa11.17□□□□□ -0.62
CD44-203ENST00000278386 LARS2Q15031 903 aaKnown RBP11.17□□□□□ -0.62
CD44-203ENST00000278386 HIKESHIQ53FT3 197 aa11.17□□□□□ -0.62
CD44-203ENST00000278386 PRAMEF8Q5VWM4 474 aa11.17□□□□□ -0.62
CD44-203ENST00000278386 PRAMEF7Q5VXH5 474 aa11.17□□□□□ -0.62
CD44-203ENST00000278386 WBP2NLQ6ICG8 309 aa11.17□□□□□ -0.62
CD44-203ENST00000278386 POMGNT2Q8NAT1 580 aa11.17□□□□□ -0.62
CD44-203ENST00000278386 GLB1L3Q8NCI6 653 aaPredicted RBP11.17□□□□□ -0.62
CD44-203ENST00000278386 OR10H5Q8NGA6 315 aa11.17□□□□□ -0.62
CD44-203ENST00000278386 FBXO17Q96EF6 278 aa11.17□□□□□ -0.62
CD44-203ENST00000278386 AURKBQ96GD4 344 aaPredicted RBP11.17□□□□□ -0.62
CD44-203ENST00000278386 ZNF385AQ96PM9 386 aaKnown RBP11.17□□□□□ -0.62
CD44-203ENST00000278386 TNFRSF13CQ96RJ3 184 aa11.17□□□□□ -0.62
CD44-203ENST00000278386 SF3B5Q9BWJ5 86 aaKnown RBP11.17□□□□□ -0.62
CD44-203ENST00000278386 PARD6BQ9BYG5 372 aa11.17□□□□□ -0.62
CD44-203ENST00000278386 MOKQ9UQ07 419 aa11.17□□□□□ -0.62
CD44-203ENST00000278386 GPR45Q9Y5Y3 372 aa11.17□□□□□ -0.62
CD44-203ENST00000278386 FKBP7Q9Y680 259 aa11.17□□□□□ -0.62
CD44-203ENST00000278386 PMF1-BGLAPU3KQ54 211 aa11.17□□□□□ -0.62
CD44-203ENST00000278386 ATRQ13535 2644 aa11.17□□□□□ -0.62
CD44-203ENST00000278386 FBN1P35555 2871 aaKnown RBP11.16□□□□□ -0.62
CD44-203ENST00000278386 DSPPQ9NZW4 1301 aa11.16□□□□□ -0.62
CD44-203ENST00000278386 CDHR4A6H8M9 788 aa11.16□□□□□ -0.62
CD44-203ENST00000278386 ELOA3DA6NLF2 546 aaPredicted RBP11.16□□□□□ -0.62
CD44-203ENST00000278386 A8MVM7 634 aa11.16□□□□□ -0.62
CD44-203ENST00000278386 ZNF587BE7ETH6 402 aa11.16□□□□□ -0.62
CD44-203ENST00000278386 KLF11O14901 512 aa11.16□□□□□ -0.62
CD44-203ENST00000278386 IL6P05231 212 aa11.16□□□□□ -0.62
CD44-203ENST00000278386 GTF2E2P29084 291 aaKnown RBP11.16□□□□□ -0.62
CD44-203ENST00000278386 APOBEC3AP31941 199 aaPredicted RBP11.16□□□□□ -0.62
CD44-203ENST00000278386 EFNA4P52798 201 aa11.16□□□□□ -0.62
CD44-203ENST00000278386 UBE2NP61088 152 aaKnown RBP11.16□□□□□ -0.62
CD44-203ENST00000278386 VLDLRP98155 873 aa11.16□□□□□ -0.62
CD44-203ENST00000278386 LOXL1Q08397 574 aaPredicted RBP11.16□□□□□ -0.62
CD44-203ENST00000278386 GSTA3Q16772 222 aa11.16□□□□□ -0.62
CD44-203ENST00000278386 ELOA3BQ3SY89 546 aa11.16□□□□□ -0.62
CD44-203ENST00000278386 PDCD4Q53EL6 469 aaKnown RBP11.16□□□□□ -0.62
CD44-203ENST00000278386 C6orf10Q5SRN2 563 aa11.16□□□□□ -0.62
CD44-203ENST00000278386 RNF220Q5VTB9 566 aa11.16□□□□□ -0.62
CD44-203ENST00000278386 TMEM225Q6GV28 225 aa11.16□□□□□ -0.62
CD44-203ENST00000278386 NIPAL3Q6P499 406 aa11.16□□□□□ -0.62
CD44-203ENST00000278386 ELOA3Q8NG57 546 aa11.16□□□□□ -0.62
CD44-203ENST00000278386 TMEM19Q96HH6 336 aa11.16□□□□□ -0.62
CD44-203ENST00000278386 KCNK17Q96T54 332 aa11.16□□□□□ -0.62
CD44-203ENST00000278386 ADAM19Q9H013 955 aa11.16□□□□□ -0.62
CD44-203ENST00000278386 RMND5AQ9H871 391 aa11.16□□□□□ -0.62
CD44-203ENST00000278386 SLC6A13Q9NSD5 602 aa11.16□□□□□ -0.62
CD44-203ENST00000278386 THAP1Q9NVV9 213 aa11.16□□□□□ -0.62
CD44-203ENST00000278386 COL6A5A8TX70 2615 aa11.16□□□□□ -0.62
CD44-203ENST00000278386 MALRD1Q5VYJ5 2156 aa11.16□□□□□ -0.62
CD44-203ENST00000278386 TMEM120BA0PK00 339 aa11.15□□□□□ -0.62
CD44-203ENST00000278386 SLC22A3O75751 556 aa11.15□□□□□ -0.62
CD44-203ENST00000278386 LY6HO94772 140 aa11.15□□□□□ -0.62
CD44-203ENST00000278386 AHSA1O95433 338 aa11.15□□□□□ -0.62
CD44-203ENST00000278386 LGI1O95970 557 aa11.15□□□□□ -0.62
CD44-203ENST00000278386 SELENOPP49908 381 aa11.15□□□□□ -0.62
CD44-203ENST00000278386 SNRPD2P62316 118 aaKnown RBP11.15□□□□□ -0.62
CD44-203ENST00000278386 CARTPTQ16568 116 aa11.15□□□□□ -0.62
CD44-203ENST00000278386 TBRG1Q3YBR2 411 aa11.15□□□□□ -0.62
CD44-203ENST00000278386 GTDC1Q4AE62 458 aa11.15□□□□□ -0.62
CD44-203ENST00000278386 C1orf140Q5VVS0 124 aa11.15□□□□□ -0.62
CD44-203ENST00000278386 ATG16L1Q676U5 607 aa11.15□□□□□ -0.62
CD44-203ENST00000278386 SLC46A3Q7Z3Q1 461 aa11.15□□□□□ -0.62
CD44-203ENST00000278386 CROCCP2Q86T23 111 aa11.15□□□□□ -0.62
CD44-203ENST00000278386 ZIC4Q8N9L1 334 aa11.15□□□□□ -0.62
CD44-203ENST00000278386 OR1K1Q8NGR3 316 aa11.15□□□□□ -0.62
CD44-203ENST00000278386 C10orf105Q8TEF2 133 aa11.15□□□□□ -0.62
CD44-203ENST00000278386 SLC38A2Q96QD8 506 aa11.15□□□□□ -0.62
CD44-203ENST00000278386 ARMC7Q9H6L4 198 aa11.15□□□□□ -0.62
CD44-203ENST00000278386 TPT1P8Q9HAU6 139 aa11.15□□□□□ -0.62
CD44-203ENST00000278386 TMEM45AQ9NWC5 275 aa11.15□□□□□ -0.62
CD44-203ENST00000278386 CDC42EP3Q9UKI2 254 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms