RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 TAOK3Q9H2K8 898 aa26.27■■□□□ 1.8
CLN3-240ENST00000631023 NFKBIEO00221 500 aa26.26■■□□□ 1.79
CLN3-240ENST00000631023 RARSP54136 660 aaKnown RBP26.26■■□□□ 1.79
CLN3-240ENST00000631023 ALDH1L1O75891 902 aa26.25■■□□□ 1.79
CLN3-240ENST00000631023 GRAPQ13588 217 aa26.25■■□□□ 1.79
CLN3-240ENST00000631023 CCDC152Q4G0S7 254 aa26.25■■□□□ 1.79
CLN3-240ENST00000631023 GRAPLQ8TC17 118 aaPredicted RBP26.25■■□□□ 1.79
CLN3-240ENST00000631023 SRCIN1Q9C0H9 1055 aa26.25■■□□□ 1.79
CLN3-240ENST00000631023 RNF181Q9P0P0 153 aa26.25■■□□□ 1.79
CLN3-240ENST00000631023 LTBP3Q9NS15 1303 aa26.25■■□□□ 1.79
CLN3-240ENST00000631023 TMC4Q7Z404 712 aa26.23■■□□□ 1.79
CLN3-240ENST00000631023 ATP6V0A2Q9Y487 856 aa26.23■■□□□ 1.79
CLN3-240ENST00000631023 FKBP4Q02790 459 aaKnown RBP eCLIP26.22■■□□□ 1.79
CLN3-240ENST00000631023 OLFM4Q6UX06 510 aa26.22■■□□□ 1.79
CLN3-240ENST00000631023 ZNF784Q8NCA9 323 aaPredicted RBP26.22■■□□□ 1.79
CLN3-240ENST00000631023 C9orf78Q9NZ63 289 aaPredicted RBP26.22■■□□□ 1.79
CLN3-240ENST00000631023 CTSWP56202 376 aa26.21■■□□□ 1.79
CLN3-240ENST00000631023 NOB1Q9ULX3 412 aaKnown RBP26.21■■□□□ 1.79
CLN3-240ENST00000631023 KIF16BQ96L93 1317 aa26.2■■□□□ 1.79
CLN3-240ENST00000631023 GRM8O00222 908 aa26.2■■□□□ 1.79
CLN3-240ENST00000631023 SP8Q8IXZ3 490 aa26.2■■□□□ 1.79
CLN3-240ENST00000631023 PLA2G12BQ9BX93 195 aa26.2■■□□□ 1.79
CLN3-240ENST00000631023 CASP7P55210 303 aa26.19■■□□□ 1.78
CLN3-240ENST00000631023 RPS8P62241 208 aaKnown RBP26.19■■□□□ 1.78
CLN3-240ENST00000631023 TTLL11Q8NHH1 800 aa26.19■■□□□ 1.78
CLN3-240ENST00000631023 PSMD1Q99460 953 aa26.19■■□□□ 1.78
CLN3-240ENST00000631023 API5Q9BZZ5 524 aaKnown RBP26.19■■□□□ 1.78
CLN3-240ENST00000631023 ZC3H4Q9UPT8 1303 aaKnown RBP26.18■■□□□ 1.78
CLN3-240ENST00000631023 CELF1Q92879 486 aaKnown RBP26.18■■□□□ 1.78
CLN3-240ENST00000631023 IPO8O15397 1037 aaKnown RBP26.17■■□□□ 1.78
CLN3-240ENST00000631023 PRELPP51888 382 aa26.17■■□□□ 1.78
CLN3-240ENST00000631023 ARHGAP45Q92619 1136 aa26.17■■□□□ 1.78
CLN3-240ENST00000631023 CCDC85AQ96PX6 553 aaPredicted RBP26.17■■□□□ 1.78
CLN3-240ENST00000631023 TIAM2Q8IVF5 1701 aa26.17■■□□□ 1.78
CLN3-240ENST00000631023 SEC31BQ9NQW1 1179 aa26.16■■□□□ 1.78
CLN3-240ENST00000631023 MPNDQ8N594 471 aa26.15■■□□□ 1.78
CLN3-240ENST00000631023 SNED1Q8TER0 1413 aa26.15■■□□□ 1.78
CLN3-240ENST00000631023 CDC5LQ99459 802 aaKnown RBP26.15■■□□□ 1.78
CLN3-240ENST00000631023 ZNF277Q9NRM2 450 aaPredicted RBP26.15■■□□□ 1.78
CLN3-240ENST00000631023 LRRC37AA6NMS7 1700 aa26.14■■□□□ 1.78
CLN3-240ENST00000631023 CCT4P50991 539 aaKnown RBP26.14■■□□□ 1.78
CLN3-240ENST00000631023 ANKRD18AQ8IVF6 992 aa26.14■■□□□ 1.78
CLN3-240ENST00000631023 RTL9Q8NET4 1388 aa26.14■■□□□ 1.77
CLN3-240ENST00000631023 BCAR3O75815 825 aa26.13■■□□□ 1.77
CLN3-240ENST00000631023 DPP8Q6V1X1 898 aaPredicted RBP26.13■■□□□ 1.77
CLN3-240ENST00000631023 SUPT20HQ8NEM7 779 aa26.13■■□□□ 1.77
CLN3-240ENST00000631023 GREM2Q9H772 168 aa26.13■■□□□ 1.77
CLN3-240ENST00000631023 GPBP1L1Q9HC44 474 aaPredicted RBP26.13■■□□□ 1.77
CLN3-240ENST00000631023 CSF1RP07333 972 aa26.12■■□□□ 1.77
CLN3-240ENST00000631023 IARSP41252 1262 aaKnown RBP26.12■■□□□ 1.77
CLN3-240ENST00000631023 ZNF526Q8TF50 670 aaPredicted RBP26.12■■□□□ 1.77
CLN3-240ENST00000631023 SPEF2Q9C093 1822 aa26.12■■□□□ 1.77
CLN3-240ENST00000631023 UTYO14607 1347 aa26.11■■□□□ 1.77
CLN3-240ENST00000631023 FRAT1Q92837 279 aaPredicted RBP26.11■■□□□ 1.77
CLN3-240ENST00000631023 VPS33BQ9H267 617 aa26.11■■□□□ 1.77
CLN3-240ENST00000631023 NBPF7P0C2Y1 421 aaPredicted RBP26.1■■□□□ 1.77
CLN3-240ENST00000631023 FOXO4P98177 505 aa26.1■■□□□ 1.77
CLN3-240ENST00000631023 SLC51AQ86UW1 340 aa26.1■■□□□ 1.77
CLN3-240ENST00000631023 RTFDC1Q9BY42 306 aaPredicted RBP26.1■■□□□ 1.77
CLN3-240ENST00000631023 NSFL1CQ9UNZ2 370 aaKnown RBP26.1■■□□□ 1.77
CLN3-240ENST00000631023 COL4A1P02462 1669 aa26.1■■□□□ 1.77
CLN3-240ENST00000631023 KDM2BQ8NHM5 1336 aa26.1■■□□□ 1.77
CLN3-240ENST00000631023 DPY19L2Q6NUT2 758 aa26.09■■□□□ 1.77
CLN3-240ENST00000631023 JDP2Q8WYK2 163 aa26.09■■□□□ 1.77
CLN3-240ENST00000631023 ITGA6P23229 1130 aa26.08■■□□□ 1.77
CLN3-240ENST00000631023 IGHMBP2P38935 993 aaKnown RBP26.08■■□□□ 1.77
CLN3-240ENST00000631023 ATF7IPQ6VMQ6 1270 aa26.08■■□□□ 1.77
CLN3-240ENST00000631023 USP44Q9H0E7 712 aa26.08■■□□□ 1.77
CLN3-240ENST00000631023 CHMP3Q9Y3E7 222 aa26.08■■□□□ 1.77
CLN3-240ENST00000631023 ANKRD18BA2A2Z9 1011 aa26.07■■□□□ 1.76
CLN3-240ENST00000631023 IFIT5Q13325 482 aaKnown RBP26.07■■□□□ 1.76
CLN3-240ENST00000631023 FAM161AQ3B820 660 aa26.07■■□□□ 1.76
CLN3-240ENST00000631023 LMBR1LQ6UX01 489 aa26.07■■□□□ 1.76
CLN3-240ENST00000631023 LARGE2Q8N3Y3 721 aa26.07■■□□□ 1.76
CLN3-240ENST00000631023 BSDC1Q9NW68 430 aaPredicted RBP26.07■■□□□ 1.76
CLN3-240ENST00000631023 GLTPD2A6NH11 291 aa26.06■■□□□ 1.76
CLN3-240ENST00000631023 EPHA10Q5JZY3 1008 aa26.06■■□□□ 1.76
CLN3-240ENST00000631023 ZKSCAN2Q63HK3 967 aa26.06■■□□□ 1.76
CLN3-240ENST00000631023 SUCLG2Q96I99 432 aa26.06■■□□□ 1.76
CLN3-240ENST00000631023 ANKIB1Q9P2G1 1089 aa26.06■■□□□ 1.76
CLN3-240ENST00000631023 PPIP5K2O43314 1243 aa26.05■■□□□ 1.76
CLN3-240ENST00000631023 TRIM27P14373 513 aa26.05■■□□□ 1.76
CLN3-240ENST00000631023 MPHOSPH8Q99549 860 aa26.05■■□□□ 1.76
CLN3-240ENST00000631023 HDAC5Q9UQL6 1122 aa26.05■■□□□ 1.76
CLN3-240ENST00000631023 GPSM2P81274 684 aa26.04■■□□□ 1.76
CLN3-240ENST00000631023 CCDC57Q2TAC2 916 aa26.04■■□□□ 1.76
CLN3-240ENST00000631023 INTS3Q68E01 1043 aaKnown RBP26.04■■□□□ 1.76
CLN3-240ENST00000631023 C6orf229H3BNL8 230 aa26.03■■□□□ 1.76
CLN3-240ENST00000631023 PODXL2Q9NZ53 605 aa26.03■■□□□ 1.76
CLN3-240ENST00000631023 NIM1KQ8IY84 436 aa26.03■■□□□ 1.76
CLN3-240ENST00000631023 AOC3Q16853 763 aa26.02■■□□□ 1.76
CLN3-240ENST00000631023 KAZALD1Q96I82 304 aa26.02■■□□□ 1.76
CLN3-240ENST00000631023 EYA3Q99504 573 aa26.02■■□□□ 1.76
CLN3-240ENST00000631023 LTBP1Q14766 1721 aa26.02■■□□□ 1.76
CLN3-240ENST00000631023 UBTFL1P0CB47 393 aaPredicted RBP26.01■■□□□ 1.75
CLN3-240ENST00000631023 XDHP47989 1333 aa26.01■■□□□ 1.75
CLN3-240ENST00000631023 TAF7LQ5H9L4 462 aa26.01■■□□□ 1.75
CLN3-240ENST00000631023 BICC1Q9H694 974 aaKnown RBP26.01■■□□□ 1.75
CLN3-240ENST00000631023 POLLQ9UGP5 575 aa26.01■■□□□ 1.75
CLN3-240ENST00000631023 GGA1Q9UJY5 639 aa26.01■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms