RNA–Protein interactions for RNA: ENST00000618856.1

NEK3-209, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-209ENST00000618856 GRIPAP1Q4V328 841 aa10.53□□□□□ -0.72
NEK3-209ENST00000618856 CCDC93Q567U6 631 aa10.53□□□□□ -0.72
NEK3-209ENST00000618856 RPGRQ92834 1020 aaKnown RBP10.53□□□□□ -0.72
NEK3-209ENST00000618856 PLA2G12BQ9BX93 195 aa10.53□□□□□ -0.72
NEK3-209ENST00000618856 F6X3S4 739 aa10.52□□□□□ -0.73
NEK3-209ENST00000618856 PDE8AO60658 829 aa10.52□□□□□ -0.73
NEK3-209ENST00000618856 RARSP54136 660 aaKnown RBP10.52□□□□□ -0.73
NEK3-209ENST00000618856 RASSF7Q02833 373 aa10.52□□□□□ -0.73
NEK3-209ENST00000618856 GRAPQ13588 217 aa10.52□□□□□ -0.73
NEK3-209ENST00000618856 C9orf131Q5VYM1 1079 aa10.52□□□□□ -0.73
NEK3-209ENST00000618856 OLFM4Q6UX06 510 aa10.52□□□□□ -0.73
NEK3-209ENST00000618856 RTKN2Q8IZC4 609 aa10.52□□□□□ -0.73
NEK3-209ENST00000618856 GRAPLQ8TC17 118 aaPredicted RBP10.52□□□□□ -0.73
NEK3-209ENST00000618856 PSMD1Q99460 953 aa10.52□□□□□ -0.73
NEK3-209ENST00000618856 ATP6V0A2Q9Y487 856 aa10.52□□□□□ -0.73
NEK3-209ENST00000618856 UTYO14607 1347 aa10.52□□□□□ -0.73
NEK3-209ENST00000618856 DICER1Q9UPY3 1922 aaKnown RBP10.51□□□□□ -0.73
NEK3-209ENST00000618856 LTBP1Q14766 1721 aa10.51□□□□□ -0.73
NEK3-209ENST00000618856 PPEF1O14829 653 aaPredicted RBP10.51□□□□□ -0.73
NEK3-209ENST00000618856 ALDH1L1O75891 902 aa10.51□□□□□ -0.73
NEK3-209ENST00000618856 CSF1RP07333 972 aa10.51□□□□□ -0.73
NEK3-209ENST00000618856 FKBP4Q02790 459 aaKnown RBP eCLIP10.51□□□□□ -0.73
NEK3-209ENST00000618856 TMC4Q7Z404 712 aa10.51□□□□□ -0.73
NEK3-209ENST00000618856 SLC51AQ86UW1 340 aa10.51□□□□□ -0.73
NEK3-209ENST00000618856 SP8Q8IXZ3 490 aa10.51□□□□□ -0.73
NEK3-209ENST00000618856 RTFDC1Q9BY42 306 aaPredicted RBP10.51□□□□□ -0.73
NEK3-209ENST00000618856 TAOK3Q9H2K8 898 aa10.51□□□□□ -0.73
NEK3-209ENST00000618856 RTL5Q5HYW3 569 aaPredicted RBP10.5□□□□□ -0.73
NEK3-209ENST00000618856 DDX46Q7L014 1031 aaKnown RBP10.5□□□□□ -0.73
NEK3-209ENST00000618856 TTLL11Q8NHH1 800 aa10.5□□□□□ -0.73
NEK3-209ENST00000618856 ARHGAP45Q92619 1136 aa10.5□□□□□ -0.73
NEK3-209ENST00000618856 DUOX1Q9NRD9 1551 aa10.5□□□□□ -0.73
NEK3-209ENST00000618856 TAF1P21675 1872 aa10.49□□□□□ -0.73
NEK3-209ENST00000618856 CTSWP56202 376 aa10.49□□□□□ -0.73
NEK3-209ENST00000618856 CCDC152Q4G0S7 254 aa10.49□□□□□ -0.73
NEK3-209ENST00000618856 JARID2Q92833 1246 aaPredicted RBP10.49□□□□□ -0.73
NEK3-209ENST00000618856 CELF1Q92879 486 aaKnown RBP10.49□□□□□ -0.73
NEK3-209ENST00000618856 VPS33BQ9H267 617 aa10.49□□□□□ -0.73
NEK3-209ENST00000618856 RNF181Q9P0P0 153 aa10.49□□□□□ -0.73
NEK3-209ENST00000618856 ZNF219Q9P2Y4 722 aaPredicted RBP10.49□□□□□ -0.73
NEK3-209ENST00000618856 TIAM2Q8IVF5 1701 aa10.49□□□□□ -0.73
NEK3-209ENST00000618856 MYH3P11055 1940 aa10.48□□□□□ -0.73
NEK3-209ENST00000618856 COL4A5P29400 1685 aa10.48□□□□□ -0.73
NEK3-209ENST00000618856 GRM8O00222 908 aa10.48□□□□□ -0.73
NEK3-209ENST00000618856 RPS8P62241 208 aaKnown RBP10.48□□□□□ -0.73
NEK3-209ENST00000618856 FOXO4P98177 505 aa10.48□□□□□ -0.73
NEK3-209ENST00000618856 UBE3BQ7Z3V4 1068 aa10.48□□□□□ -0.73
NEK3-209ENST00000618856 KAZALD1Q96I82 304 aa10.48□□□□□ -0.73
NEK3-209ENST00000618856 BCL2L13Q9BXK5 485 aa10.48□□□□□ -0.73
NEK3-209ENST00000618856 SRCIN1Q9C0H9 1055 aa10.48□□□□□ -0.73
NEK3-209ENST00000618856 SEC31BQ9NQW1 1179 aa10.48□□□□□ -0.73
NEK3-209ENST00000618856 SMC4Q9NTJ3 1288 aa10.48□□□□□ -0.73
NEK3-209ENST00000618856 NOB1Q9ULX3 412 aaKnown RBP10.48□□□□□ -0.73
NEK3-209ENST00000618856 CCDC88AQ3V6T2 1871 aa10.48□□□□□ -0.73
NEK3-209ENST00000618856 GREM2Q9H772 168 aa10.47□□□□□ -0.73
NEK3-209ENST00000618856 PODXL2Q9NZ53 605 aa10.47□□□□□ -0.73
NEK3-209ENST00000618856 GLTPD2A6NH11 291 aa10.46□□□□□ -0.73
NEK3-209ENST00000618856 FZD9O00144 591 aa10.46□□□□□ -0.73
NEK3-209ENST00000618856 IARSP41252 1262 aaKnown RBP10.46□□□□□ -0.73
NEK3-209ENST00000618856 EPHA10Q5JZY3 1008 aa10.46□□□□□ -0.73
NEK3-209ENST00000618856 API5Q9BZZ5 524 aaKnown RBP10.46□□□□□ -0.73
NEK3-209ENST00000618856 USP44Q9H0E7 712 aa10.46□□□□□ -0.73
NEK3-209ENST00000618856 ZNF277Q9NRM2 450 aaPredicted RBP10.46□□□□□ -0.73
NEK3-209ENST00000618856 KIF16BQ96L93 1317 aa10.46□□□□□ -0.73
NEK3-209ENST00000618856 WDR90Q96KV7 1748 aa10.45□□□□□ -0.74
NEK3-209ENST00000618856 KIF3CO14782 793 aa10.45□□□□□ -0.74
NEK3-209ENST00000618856 NBPF7P0C2Y1 421 aaPredicted RBP10.45□□□□□ -0.74
NEK3-209ENST00000618856 CCT4P50991 539 aaKnown RBP10.45□□□□□ -0.74
NEK3-209ENST00000618856 RABL6Q3YEC7 729 aaPredicted RBP10.45□□□□□ -0.74
NEK3-209ENST00000618856 INTS3Q68E01 1043 aaKnown RBP10.45□□□□□ -0.74
NEK3-209ENST00000618856 SLC4A10Q6U841 1118 aa10.45□□□□□ -0.74
NEK3-209ENST00000618856 MPNDQ8N594 471 aa10.45□□□□□ -0.74
NEK3-209ENST00000618856 BSDC1Q9NW68 430 aaPredicted RBP10.45□□□□□ -0.74
NEK3-209ENST00000618856 POTECB2RU33 542 aa10.44□□□□□ -0.74
NEK3-209ENST00000618856 BCAR3O75815 825 aa10.44□□□□□ -0.74
NEK3-209ENST00000618856 GPSM2P81274 684 aa10.44□□□□□ -0.74
NEK3-209ENST00000618856 KIAA2012Q0VF49 1180 aa10.44□□□□□ -0.74
NEK3-209ENST00000618856 DPP8Q6V1X1 898 aaPredicted RBP10.44□□□□□ -0.74
NEK3-209ENST00000618856 SUPT20HQ8NEM7 779 aa10.44□□□□□ -0.74
NEK3-209ENST00000618856 CDC5LQ99459 802 aaKnown RBP10.44□□□□□ -0.74
NEK3-209ENST00000618856 GPBP1L1Q9HC44 474 aaPredicted RBP10.44□□□□□ -0.74
NEK3-209ENST00000618856 KDM2BQ8NHM5 1336 aa10.43□□□□□ -0.74
NEK3-209ENST00000618856 ITGA6P23229 1130 aa10.43□□□□□ -0.74
NEK3-209ENST00000618856 FAM161AQ3B820 660 aa10.43□□□□□ -0.74
NEK3-209ENST00000618856 ANKRD18AQ8IVF6 992 aa10.43□□□□□ -0.74
NEK3-209ENST00000618856 ANKRD44Q8N8A2 993 aa10.43□□□□□ -0.74
NEK3-209ENST00000618856 TBC1D16Q8TBP0 767 aa10.43□□□□□ -0.74
NEK3-209ENST00000618856 SUCLG2Q96I99 432 aa10.43□□□□□ -0.74
NEK3-209ENST00000618856 L3MBTL3Q96JM7 780 aaPredicted RBP10.43□□□□□ -0.74
NEK3-209ENST00000618856 CCDC85AQ96PX6 553 aaPredicted RBP10.43□□□□□ -0.74
NEK3-209ENST00000618856 TMX4Q9H1E5 349 aaPredicted RBP10.43□□□□□ -0.74
NEK3-209ENST00000618856 C9orf78Q9NZ63 289 aaPredicted RBP10.43□□□□□ -0.74
NEK3-209ENST00000618856 POLLQ9UGP5 575 aa10.43□□□□□ -0.74
NEK3-209ENST00000618856 ZNF541Q9H0D2 1346 aa10.42□□□□□ -0.74
NEK3-209ENST00000618856 IPO8O15397 1037 aaKnown RBP10.42□□□□□ -0.74
NEK3-209ENST00000618856 TRIM27P14373 513 aa10.42□□□□□ -0.74
NEK3-209ENST00000618856 LMBR1LQ6UX01 489 aa10.42□□□□□ -0.74
NEK3-209ENST00000618856 ATF7IPQ6VMQ6 1270 aa10.42□□□□□ -0.74
NEK3-209ENST00000618856 NMRK2Q9NPI5 230 aa10.42□□□□□ -0.74
NEK3-209ENST00000618856 MINPP1Q9UNW1 487 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms