RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	TAF1	P21675	1872 aa		13.71	□□□□□ -0.21
LSM4-205	ENST00000597776	COL4A1	P02462	1669 aa		13.7	□□□□□ -0.22
LSM4-205	ENST00000597776	FOXN1	O15353	648 aa		13.7	□□□□□ -0.22
LSM4-205	ENST00000597776	CXCL9	Q07325	125 aa		13.7	□□□□□ -0.22
LSM4-205	ENST00000597776	RTL5	Q5HYW3	569 aa	Predicted RBP	13.7	□□□□□ -0.22
LSM4-205	ENST00000597776	ANKRD13D	Q6ZTN6	518 aa		13.7	□□□□□ -0.22
LSM4-205	ENST00000597776	SUPT20H	Q8NEM7	779 aa		13.7	□□□□□ -0.22
LSM4-205	ENST00000597776	FAM89A	Q96GI7	184 aa		13.7	□□□□□ -0.22
LSM4-205	ENST00000597776	ISCA1	Q9BUE6	129 aa		13.7	□□□□□ -0.22
LSM4-205	ENST00000597776	ZNRF3	Q9ULT6	936 aa		13.7	□□□□□ -0.22
LSM4-205	ENST00000597776	DUOX1	Q9NRD9	1551 aa		13.7	□□□□□ -0.22
LSM4-205	ENST00000597776	RASSF10	A6NK89	507 aa		13.69	□□□□□ -0.22
LSM4-205	ENST00000597776	TRAF5	O00463	557 aa		13.69	□□□□□ -0.22
LSM4-205	ENST00000597776	APAF1	O14727	1248 aa		13.69	□□□□□ -0.22
LSM4-205	ENST00000597776	GMPS	P49915	693 aa	Predicted RBP	13.69	□□□□□ -0.22
LSM4-205	ENST00000597776	KIAA2012	Q0VF49	1180 aa		13.69	□□□□□ -0.22
LSM4-205	ENST00000597776	VPS33B	Q9H267	617 aa		13.69	□□□□□ -0.22
LSM4-205	ENST00000597776	GPRC5D	Q9NZD1	345 aa		13.69	□□□□□ -0.22
LSM4-205	ENST00000597776	ABT1	Q9ULW3	272 aa	Known RBP	13.69	□□□□□ -0.22
LSM4-205	ENST00000597776	LRRC37A	A6NMS7	1700 aa		13.68	□□□□□ -0.22
LSM4-205	ENST00000597776	RAD17	O75943	681 aa		13.68	□□□□□ -0.22
LSM4-205	ENST00000597776	ZNF853	P0CG23	659 aa		13.68	□□□□□ -0.22
LSM4-205	ENST00000597776	USP50	Q70EL3	339 aa	Predicted RBP	13.68	□□□□□ -0.22
LSM4-205	ENST00000597776	ADARB2	Q9NS39	739 aa	Known RBP	13.68	□□□□□ -0.22
LSM4-205	ENST00000597776	HYPK	Q9NX55	129 aa		13.68	□□□□□ -0.22
LSM4-205	ENST00000597776	ELL2	O00472	640 aa	Predicted RBP	13.67	□□□□□ -0.22
LSM4-205	ENST00000597776	DEFB115	Q30KQ5	88 aa		13.67	□□□□□ -0.22
LSM4-205	ENST00000597776	CIAPIN1	Q6FI81	312 aa		13.67	□□□□□ -0.22
LSM4-205	ENST00000597776	CELF1	Q92879	486 aa	Known RBP	13.67	□□□□□ -0.22
LSM4-205	ENST00000597776	IFT57	Q9NWB7	429 aa		13.67	□□□□□ -0.22
LSM4-205	ENST00000597776	SHTN1	A0MZ66	631 aa		13.66	□□□□□ -0.22
LSM4-205	ENST00000597776	YDJC	A8MPS7	323 aa		13.66	□□□□□ -0.22
LSM4-205	ENST00000597776	SF3B3	Q15393	1217 aa	Known RBP	13.66	□□□□□ -0.22
LSM4-205	ENST00000597776	AIDA	Q96BJ3	306 aa		13.66	□□□□□ -0.22
LSM4-205	ENST00000597776	PHAX	Q9H814	394 aa	Known RBP	13.66	□□□□□ -0.22
LSM4-205	ENST00000597776	WDR33	Q9C0J8	1336 aa	Known RBP	13.65	□□□□□ -0.22
LSM4-205	ENST00000597776	IRS4	O14654	1257 aa	Predicted RBP	13.65	□□□□□ -0.22
LSM4-205	ENST00000597776	GOLGA2	Q08379	1002 aa		13.65	□□□□□ -0.22
LSM4-205	ENST00000597776	CST9	Q5W186	159 aa		13.65	□□□□□ -0.22
LSM4-205	ENST00000597776	TMC4	Q7Z404	712 aa		13.65	□□□□□ -0.22
LSM4-205	ENST00000597776	RIC3	Q7Z5B4	369 aa		13.65	□□□□□ -0.22
LSM4-205	ENST00000597776	C8orf58	Q8NAV2	365 aa		13.65	□□□□□ -0.22
LSM4-205	ENST00000597776	TRPM4	Q8TD43	1214 aa		13.65	□□□□□ -0.22
LSM4-205	ENST00000597776	BCL2L13	Q9BXK5	485 aa		13.65	□□□□□ -0.22
LSM4-205	ENST00000597776	WBP1L	Q9NX94	342 aa		13.65	□□□□□ -0.22
LSM4-205	ENST00000597776	RIMBP2	O15034	1052 aa		13.64	□□□□□ -0.23
LSM4-205	ENST00000597776	CTCF	P49711	727 aa	Predicted RBP	13.64	□□□□□ -0.23
LSM4-205	ENST00000597776	GNAI1	P63096	354 aa		13.64	□□□□□ -0.23
LSM4-205	ENST00000597776	GPSM2	P81274	684 aa		13.64	□□□□□ -0.23
LSM4-205	ENST00000597776	GRM1	Q13255	1194 aa		13.64	□□□□□ -0.23
LSM4-205	ENST00000597776	TRIM28	Q13263	835 aa	Known RBP	13.64	□□□□□ -0.23
LSM4-205	ENST00000597776	TNIP1	Q15025	636 aa		13.64	□□□□□ -0.23
LSM4-205	ENST00000597776	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	13.64	□□□□□ -0.23
LSM4-205	ENST00000597776	GPR101	Q96P66	508 aa	Predicted RBP	13.64	□□□□□ -0.23
LSM4-205	ENST00000597776	MYD88	Q99836	296 aa		13.64	□□□□□ -0.23
LSM4-205	ENST00000597776	GLIS2	Q9BZE0	524 aa	Predicted RBP	13.64	□□□□□ -0.23
LSM4-205	ENST00000597776	DBNDD1	Q9H9R9	158 aa		13.64	□□□□□ -0.23
LSM4-205	ENST00000597776	NSFL1C	Q9UNZ2	370 aa	Known RBP	13.64	□□□□□ -0.23
LSM4-205	ENST00000597776	C6orf229	H3BNL8	230 aa		13.63	□□□□□ -0.23
LSM4-205	ENST00000597776	LBX1	P52954	281 aa		13.63	□□□□□ -0.23
LSM4-205	ENST00000597776	HIRA	P54198	1017 aa	Predicted RBP	13.63	□□□□□ -0.23
LSM4-205	ENST00000597776	CALD1	Q05682	793 aa	Known RBP	13.63	□□□□□ -0.23
LSM4-205	ENST00000597776	WASHC4	Q2M389	1173 aa		13.63	□□□□□ -0.23
LSM4-205	ENST00000597776	CYP4F22	Q6NT55	531 aa		13.63	□□□□□ -0.23
LSM4-205	ENST00000597776	JARID2	Q92833	1246 aa	Predicted RBP	13.63	□□□□□ -0.23
LSM4-205	ENST00000597776	CAPNS2	Q96L46	248 aa		13.63	□□□□□ -0.23
LSM4-205	ENST00000597776	PRDM10	Q9NQV6	1147 aa		13.63	□□□□□ -0.23
LSM4-205	ENST00000597776	POLL	Q9UGP5	575 aa		13.63	□□□□□ -0.23
LSM4-205	ENST00000597776	CNOT7	Q9UIV1	285 aa	Known RBP	13.63	□□□□□ -0.23
LSM4-205	ENST00000597776	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.63	□□□□□ -0.23
LSM4-205	ENST00000597776	TRPM7	Q96QT4	1865 aa		13.63	□□□□□ -0.23
LSM4-205	ENST00000597776	CDHR2	Q9BYE9	1310 aa		13.63	□□□□□ -0.23
LSM4-205	ENST00000597776	THSD7B	Q9C0I4	1608 aa		13.62	□□□□□ -0.23
LSM4-205	ENST00000597776	PSMD14	O00487	310 aa		13.62	□□□□□ -0.23
LSM4-205	ENST00000597776	DOK7	Q18PE1	504 aa		13.62	□□□□□ -0.23
LSM4-205	ENST00000597776	CCDC184	Q52MB2	194 aa		13.62	□□□□□ -0.23
LSM4-205	ENST00000597776	MICALL2	Q8IY33	904 aa		13.62	□□□□□ -0.23
LSM4-205	ENST00000597776	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	13.62	□□□□□ -0.23
LSM4-205	ENST00000597776	SEC31B	Q9NQW1	1179 aa		13.62	□□□□□ -0.23
LSM4-205	ENST00000597776	CELF2	O95319	508 aa	Known RBP	13.61	□□□□□ -0.23
LSM4-205	ENST00000597776	HSPA8	P11142	646 aa	Known RBP	13.61	□□□□□ -0.23
LSM4-205	ENST00000597776	RPS8	P62241	208 aa	Known RBP	13.61	□□□□□ -0.23
LSM4-205	ENST00000597776	TSPYL6	Q8N831	410 aa		13.61	□□□□□ -0.23
LSM4-205	ENST00000597776	CCDC85A	Q96PX6	553 aa	Predicted RBP	13.61	□□□□□ -0.23
LSM4-205	ENST00000597776	KCNQ5	Q9NR82	932 aa		13.61	□□□□□ -0.23
LSM4-205	ENST00000597776	PGAP2	Q9UHJ9	254 aa		13.61	□□□□□ -0.23
LSM4-205	ENST00000597776	TLL2	Q9Y6L7	1015 aa		13.61	□□□□□ -0.23
LSM4-205	ENST00000597776		H7C1D1	291 aa		13.6	□□□□□ -0.23
LSM4-205	ENST00000597776	ECE2	O60344	883 aa		13.6	□□□□□ -0.23
LSM4-205	ENST00000597776	MAP2K1	Q02750	393 aa	Predicted RBP	13.6	□□□□□ -0.23
LSM4-205	ENST00000597776	DLK2	Q6UY11	383 aa		13.6	□□□□□ -0.23
LSM4-205	ENST00000597776	SAMD7	Q7Z3H4	446 aa		13.6	□□□□□ -0.23
LSM4-205	ENST00000597776	CCDC191	Q8NCU4	936 aa		13.6	□□□□□ -0.23
LSM4-205	ENST00000597776	TBC1D16	Q8TBP0	767 aa		13.6	□□□□□ -0.23
LSM4-205	ENST00000597776	TSR2	Q969E8	191 aa	Known RBP	13.6	□□□□□ -0.23
LSM4-205	ENST00000597776	ZNF408	Q9H9D4	720 aa		13.6	□□□□□ -0.23
LSM4-205	ENST00000597776	CWC25	Q9NXE8	425 aa	Predicted RBP	13.6	□□□□□ -0.23
LSM4-205	ENST00000597776	RTL9	Q8NET4	1388 aa		13.59	□□□□□ -0.23
LSM4-205	ENST00000597776	AOC2	O75106	756 aa		13.59	□□□□□ -0.23
LSM4-205	ENST00000597776	EGFR	P00533	1210 aa		13.59	□□□□□ -0.23

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