RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 MBIPQ9NS73 344 aa13.77□□□□□ -0.21
SHMT2-215ENST00000554656 ATP5J2-PTCD1G3V325 749 aa13.76□□□□□ -0.21
SHMT2-215ENST00000554656 FOXN1O15353 648 aa13.76□□□□□ -0.21
SHMT2-215ENST00000554656 CXCL9Q07325 125 aa13.76□□□□□ -0.21
SHMT2-215ENST00000554656 GRAPQ13588 217 aa13.76□□□□□ -0.21
SHMT2-215ENST00000554656 DUSP27Q5VZP5 1158 aa13.76□□□□□ -0.21
SHMT2-215ENST00000554656 SP8Q8IXZ3 490 aa13.76□□□□□ -0.21
SHMT2-215ENST00000554656 GRAPLQ8TC17 118 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-215ENST00000554656 SCN9AQ15858 1988 aa13.75□□□□□ -0.21
SHMT2-215ENST00000554656 RASSF10A6NK89 507 aa13.75□□□□□ -0.21
SHMT2-215ENST00000554656 BBOX1O75936 387 aa13.75□□□□□ -0.21
SHMT2-215ENST00000554656 LMOD1P29536 600 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-215ENST00000554656 KIAA2012Q0VF49 1180 aa13.75□□□□□ -0.21
SHMT2-215ENST00000554656 DPP8Q6V1X1 898 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-215ENST00000554656 ANKRD13DQ6ZTN6 518 aa13.75□□□□□ -0.21
SHMT2-215ENST00000554656 DDX46Q7L014 1031 aaKnown RBP13.75□□□□□ -0.21
SHMT2-215ENST00000554656 FAM89AQ96GI7 184 aa13.75□□□□□ -0.21
SHMT2-215ENST00000554656 VPS33BQ9H267 617 aa13.75□□□□□ -0.21
SHMT2-215ENST00000554656 GPRC5DQ9NZD1 345 aa13.75□□□□□ -0.21
SHMT2-215ENST00000554656 DBF4Q9UBU7 674 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-215ENST00000554656 YDJCA8MPS7 323 aa13.74□□□□□ -0.21
SHMT2-215ENST00000554656 TRAF5O00463 557 aa13.74□□□□□ -0.21
SHMT2-215ENST00000554656 APAF1O14727 1248 aa13.74□□□□□ -0.21
SHMT2-215ENST00000554656 CAPN15O75808 1086 aa13.74□□□□□ -0.21
SHMT2-215ENST00000554656 GMPSP49915 693 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-215ENST00000554656 MPNDQ8N594 471 aa13.74□□□□□ -0.21
SHMT2-215ENST00000554656 SUPT20HQ8NEM7 779 aa13.74□□□□□ -0.21
SHMT2-215ENST00000554656 ZNRF3Q9ULT6 936 aa13.74□□□□□ -0.21
SHMT2-215ENST00000554656 SHTN1A0MZ66 631 aa13.73□□□□□ -0.21
SHMT2-215ENST00000554656 USP50Q70EL3 339 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-215ENST00000554656 CELF1Q92879 486 aaKnown RBP13.73□□□□□ -0.21
SHMT2-215ENST00000554656 HYPKQ9NX55 129 aa13.73□□□□□ -0.21
SHMT2-215ENST00000554656 RAD17O75943 681 aa13.72□□□□□ -0.21
SHMT2-215ENST00000554656 SF3B3Q15393 1217 aaKnown RBP13.72□□□□□ -0.21
SHMT2-215ENST00000554656 RTL5Q5HYW3 569 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-215ENST00000554656 CST9Q5W186 159 aa13.72□□□□□ -0.21
SHMT2-215ENST00000554656 PHAXQ9H814 394 aaKnown RBP13.72□□□□□ -0.21
SHMT2-215ENST00000554656 ADARB2Q9NS39 739 aaKnown RBP13.72□□□□□ -0.21
SHMT2-215ENST00000554656 WBP1LQ9NX94 342 aa13.72□□□□□ -0.21
SHMT2-215ENST00000554656 PSME4Q14997 1843 aa13.71□□□□□ -0.21
SHMT2-215ENST00000554656 SPEF2Q9C093 1822 aa13.71□□□□□ -0.21
SHMT2-215ENST00000554656 POLR2AP24928 1970 aaKnown RBP13.71□□□□□ -0.21
SHMT2-215ENST00000554656 TRIM28Q13263 835 aaKnown RBP13.71□□□□□ -0.21
SHMT2-215ENST00000554656 DEFB115Q30KQ5 88 aa13.71□□□□□ -0.21
SHMT2-215ENST00000554656 CIAPIN1Q6FI81 312 aa13.71□□□□□ -0.21
SHMT2-215ENST00000554656 C8orf58Q8NAV2 365 aa13.71□□□□□ -0.21
SHMT2-215ENST00000554656 TRPM4Q8TD43 1214 aa13.71□□□□□ -0.21
SHMT2-215ENST00000554656 TMX4Q9H1E5 349 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-215ENST00000554656 IFT57Q9NWB7 429 aa13.71□□□□□ -0.21
SHMT2-215ENST00000554656 MYH3P11055 1940 aa13.7□□□□□ -0.22
SHMT2-215ENST00000554656 CDHR2Q9BYE9 1310 aa13.7□□□□□ -0.22
SHMT2-215ENST00000554656 WDR33Q9C0J8 1336 aaKnown RBP13.7□□□□□ -0.22
SHMT2-215ENST00000554656 ELL2O00472 640 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-215ENST00000554656 IRS4O14654 1257 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-215ENST00000554656 HIRAP54198 1017 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-215ENST00000554656 GPSM2P81274 684 aa13.7□□□□□ -0.22
SHMT2-215ENST00000554656 CCDC184Q52MB2 194 aa13.7□□□□□ -0.22
SHMT2-215ENST00000554656 TMC4Q7Z404 712 aa13.7□□□□□ -0.22
SHMT2-215ENST00000554656 GPR101Q96P66 508 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-215ENST00000554656 POLLQ9UGP5 575 aa13.7□□□□□ -0.22
SHMT2-215ENST00000554656 ABT1Q9ULW3 272 aaKnown RBP13.7□□□□□ -0.22
SHMT2-215ENST00000554656 ZNF646O15015 1829 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-215ENST00000554656 GLIS2Q9BZE0 524 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-215ENST00000554656 PGAP2Q9UHJ9 254 aa13.69□□□□□ -0.22
SHMT2-215ENST00000554656 RTL9Q8NET4 1388 aa13.69□□□□□ -0.22
SHMT2-215ENST00000554656 HSPA8P11142 646 aaKnown RBP13.68□□□□□ -0.22
SHMT2-215ENST00000554656 CTCFP49711 727 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-215ENST00000554656 GNAI1P63096 354 aa13.68□□□□□ -0.22
SHMT2-215ENST00000554656 CYP4F22Q6NT55 531 aa13.68□□□□□ -0.22
SHMT2-215ENST00000554656 TSPYL6Q8N831 410 aa13.68□□□□□ -0.22
SHMT2-215ENST00000554656 ZBTB38Q8NAP3 1195 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-215ENST00000554656 JARID2Q92833 1246 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-215ENST00000554656 CAPNS2Q96L46 248 aa13.68□□□□□ -0.22
SHMT2-215ENST00000554656 DBNDD1Q9H9R9 158 aa13.68□□□□□ -0.22
SHMT2-215ENST00000554656 PRDM10Q9NQV6 1147 aa13.68□□□□□ -0.22
SHMT2-215ENST00000554656 SEC31BQ9NQW1 1179 aa13.68□□□□□ -0.22
SHMT2-215ENST00000554656 ZBTB12Q9Y330 459 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-215ENST00000554656 TLL2Q9Y6L7 1015 aa13.68□□□□□ -0.22
SHMT2-215ENST00000554656 PSMD14O00487 310 aa13.67□□□□□ -0.22
SHMT2-215ENST00000554656 EGFRP00533 1210 aa13.67□□□□□ -0.22
SHMT2-215ENST00000554656 LBX1P52954 281 aa13.67□□□□□ -0.22
SHMT2-215ENST00000554656 GOLGA2Q08379 1002 aa13.67□□□□□ -0.22
SHMT2-215ENST00000554656 TNIP1Q15025 636 aa13.67□□□□□ -0.22
SHMT2-215ENST00000554656 WASHC4Q2M389 1173 aa13.67□□□□□ -0.22
SHMT2-215ENST00000554656 RIC3Q7Z5B4 369 aa13.67□□□□□ -0.22
SHMT2-215ENST00000554656 AIDAQ96BJ3 306 aa13.67□□□□□ -0.22
SHMT2-215ENST00000554656 MYD88Q99836 296 aa13.67□□□□□ -0.22
SHMT2-215ENST00000554656 BCL2L13Q9BXK5 485 aa13.67□□□□□ -0.22
SHMT2-215ENST00000554656 KCNQ5Q9NR82 932 aa13.67□□□□□ -0.22
SHMT2-215ENST00000554656 CNOT7Q9UIV1 285 aaKnown RBP13.67□□□□□ -0.22
SHMT2-215ENST00000554656 NSFL1CQ9UNZ2 370 aaKnown RBP13.67□□□□□ -0.22
SHMT2-215ENST00000554656 RIMBP2O15034 1052 aa13.66□□□□□ -0.22
SHMT2-215ENST00000554656 RPS8P62241 208 aaKnown RBP13.66□□□□□ -0.22
SHMT2-215ENST00000554656 DLK2Q6UY11 383 aa13.66□□□□□ -0.22
SHMT2-215ENST00000554656 MICALL2Q8IY33 904 aa13.66□□□□□ -0.22
SHMT2-215ENST00000554656 TBC1D16Q8TBP0 767 aa13.66□□□□□ -0.22
SHMT2-215ENST00000554656 C6orf229H3BNL8 230 aa13.65□□□□□ -0.22
SHMT2-215ENST00000554656 ECE2O60344 883 aa13.65□□□□□ -0.22
SHMT2-215ENST00000554656 CELF2O95319 508 aaKnown RBP13.65□□□□□ -0.22
SHMT2-215ENST00000554656 PCCAP05165 728 aaPredicted RBP13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 93.5 ms