RNA–Protein interactions for RNA: ENST00000548399.1

PRPF40B-207, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 455 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-207ENST00000548399 PRELPP51888 382 aa17.53■□□□□ 0.4
PRPF40B-207ENST00000548399 FKBP4Q02790 459 aaKnown RBP eCLIP17.53■□□□□ 0.4
PRPF40B-207ENST00000548399 CCDC152Q4G0S7 254 aa17.53■□□□□ 0.4
PRPF40B-207ENST00000548399 GRIPAP1Q4V328 841 aa17.53■□□□□ 0.4
PRPF40B-207ENST00000548399 SRCIN1Q9C0H9 1055 aa17.53■□□□□ 0.4
PRPF40B-207ENST00000548399 ATP6V0A2Q9Y487 856 aa17.53■□□□□ 0.4
PRPF40B-207ENST00000548399 ALDH1L1O75891 902 aa17.52■□□□□ 0.4
PRPF40B-207ENST00000548399 TMC4Q7Z404 712 aa17.52■□□□□ 0.4
PRPF40B-207ENST00000548399 ZC3H4Q9UPT8 1303 aaKnown RBP17.51■□□□□ 0.39
PRPF40B-207ENST00000548399 RARSP54136 660 aaKnown RBP17.51■□□□□ 0.39
PRPF40B-207ENST00000548399 CTSWP56202 376 aa17.51■□□□□ 0.39
PRPF40B-207ENST00000548399 ZNF526Q8TF50 670 aaPredicted RBP17.51■□□□□ 0.39
PRPF40B-207ENST00000548399 SNED1Q8TER0 1413 aa17.5■□□□□ 0.39
PRPF40B-207ENST00000548399 SP8Q8IXZ3 490 aa17.5■□□□□ 0.39
PRPF40B-207ENST00000548399 CELF1Q92879 486 aaKnown RBP17.5■□□□□ 0.39
PRPF40B-207ENST00000548399 CCDC85AQ96PX6 553 aaPredicted RBP17.5■□□□□ 0.39
PRPF40B-207ENST00000548399 PSMD1Q99460 953 aa17.5■□□□□ 0.39
PRPF40B-207ENST00000548399 FER1L6Q2WGJ9 1857 aa17.5■□□□□ 0.39
PRPF40B-207ENST00000548399 GRM8O00222 908 aa17.49■□□□□ 0.39
PRPF40B-207ENST00000548399 BRPF1P55201 1214 aaPredicted RBP17.49■□□□□ 0.39
PRPF40B-207ENST00000548399 CASP7P55210 303 aa17.49■□□□□ 0.39
PRPF40B-207ENST00000548399 SLC51AQ86UW1 340 aa17.49■□□□□ 0.39
PRPF40B-207ENST00000548399 GPBP1L1Q9HC44 474 aaPredicted RBP17.49■□□□□ 0.39
PRPF40B-207ENST00000548399 ZNF277Q9NRM2 450 aaPredicted RBP17.49■□□□□ 0.39
PRPF40B-207ENST00000548399 C9orf78Q9NZ63 289 aaPredicted RBP17.49■□□□□ 0.39
PRPF40B-207ENST00000548399 NOB1Q9ULX3 412 aaKnown RBP17.49■□□□□ 0.39
PRPF40B-207ENST00000548399 KIF16BQ96L93 1317 aa17.48■□□□□ 0.39
PRPF40B-207ENST00000548399 RPS8P62241 208 aaKnown RBP17.48■□□□□ 0.39
PRPF40B-207ENST00000548399 TTLL11Q8NHH1 800 aa17.48■□□□□ 0.39
PRPF40B-207ENST00000548399 PLA2G12BQ9BX93 195 aa17.48■□□□□ 0.39
PRPF40B-207ENST00000548399 API5Q9BZZ5 524 aaKnown RBP17.48■□□□□ 0.39
PRPF40B-207ENST00000548399 SEC31BQ9NQW1 1179 aa17.48■□□□□ 0.39
PRPF40B-207ENST00000548399 IARSP41252 1262 aaKnown RBP17.47■□□□□ 0.39
PRPF40B-207ENST00000548399 DPP8Q6V1X1 898 aaPredicted RBP17.47■□□□□ 0.39
PRPF40B-207ENST00000548399 RTL9Q8NET4 1388 aa17.47■□□□□ 0.39
PRPF40B-207ENST00000548399 KDM2BQ8NHM5 1336 aa17.47■□□□□ 0.39
PRPF40B-207ENST00000548399 ANKRD18AQ8IVF6 992 aa17.46■□□□□ 0.39
PRPF40B-207ENST00000548399 MPNDQ8N594 471 aa17.46■□□□□ 0.39
PRPF40B-207ENST00000548399 SUPT20HQ8NEM7 779 aa17.46■□□□□ 0.39
PRPF40B-207ENST00000548399 YTHDC1Q96MU7 727 aaKnown RBP17.46■□□□□ 0.39
PRPF40B-207ENST00000548399 CDC5LQ99459 802 aaKnown RBP17.46■□□□□ 0.39
PRPF40B-207ENST00000548399 GREM2Q9H772 168 aa17.46■□□□□ 0.39
PRPF40B-207ENST00000548399 ARHGAP45Q92619 1136 aa17.45■□□□□ 0.38
PRPF40B-207ENST00000548399 SBF1O95248 1867 aa17.45■□□□□ 0.38
PRPF40B-207ENST00000548399 TIAM2Q8IVF5 1701 aa17.44■□□□□ 0.38
PRPF40B-207ENST00000548399 IPO8O15397 1037 aaKnown RBP17.44■□□□□ 0.38
PRPF40B-207ENST00000548399 CSF1RP07333 972 aa17.44■□□□□ 0.38
PRPF40B-207ENST00000548399 CCT4P50991 539 aaKnown RBP17.44■□□□□ 0.38
PRPF40B-207ENST00000548399 JDP2Q8WYK2 163 aa17.44■□□□□ 0.38
PRPF40B-207ENST00000548399 RTFDC1Q9BY42 306 aaPredicted RBP17.44■□□□□ 0.38
PRPF40B-207ENST00000548399 NSFL1CQ9UNZ2 370 aaKnown RBP17.44■□□□□ 0.38
PRPF40B-207ENST00000548399 COL4A1P02462 1669 aa17.43■□□□□ 0.38
PRPF40B-207ENST00000548399 GLTPD2A6NH11 291 aa17.43■□□□□ 0.38
PRPF40B-207ENST00000548399 BCAR3O75815 825 aa17.43■□□□□ 0.38
PRPF40B-207ENST00000548399 ITGA6P23229 1130 aa17.43■□□□□ 0.38
PRPF40B-207ENST00000548399 FOXO4P98177 505 aa17.43■□□□□ 0.38
PRPF40B-207ENST00000548399 FAM161AQ3B820 660 aa17.43■□□□□ 0.38
PRPF40B-207ENST00000548399 DPY19L2Q6NUT2 758 aa17.43■□□□□ 0.38
PRPF40B-207ENST00000548399 LARGE2Q8N3Y3 721 aa17.43■□□□□ 0.38
PRPF40B-207ENST00000548399 UTYO14607 1347 aa17.43■□□□□ 0.38
PRPF40B-207ENST00000548399 LRRC37AA6NMS7 1700 aa17.42■□□□□ 0.38
PRPF40B-207ENST00000548399 PPIP5K2O43314 1243 aa17.42■□□□□ 0.38
PRPF40B-207ENST00000548399 NBPF7P0C2Y1 421 aaPredicted RBP17.42■□□□□ 0.38
PRPF40B-207ENST00000548399 GPSM2P81274 684 aa17.42■□□□□ 0.38
PRPF40B-207ENST00000548399 FRAT1Q92837 279 aaPredicted RBP17.42■□□□□ 0.38
PRPF40B-207ENST00000548399 VPS33BQ9H267 617 aa17.42■□□□□ 0.38
PRPF40B-207ENST00000548399 CHMP3Q9Y3E7 222 aa17.42■□□□□ 0.38
PRPF40B-207ENST00000548399 ANKRD18BA2A2Z9 1011 aa17.41■□□□□ 0.38
PRPF40B-207ENST00000548399 IGHMBP2P38935 993 aaKnown RBP17.41■□□□□ 0.38
PRPF40B-207ENST00000548399 LMBR1LQ6UX01 489 aa17.41■□□□□ 0.38
PRPF40B-207ENST00000548399 ANKIB1Q9P2G1 1089 aa17.41■□□□□ 0.38
PRPF40B-207ENST00000548399 TAF1P21675 1872 aa17.4■□□□□ 0.38
PRPF40B-207ENST00000548399 C6orf229H3BNL8 230 aa17.4■□□□□ 0.38
PRPF40B-207ENST00000548399 IFIT5Q13325 482 aaKnown RBP17.4■□□□□ 0.38
PRPF40B-207ENST00000548399 AOC3Q16853 763 aa17.4■□□□□ 0.38
PRPF40B-207ENST00000548399 EPHA10Q5JZY3 1008 aa17.4■□□□□ 0.38
PRPF40B-207ENST00000548399 NIM1KQ8IY84 436 aa17.4■□□□□ 0.38
PRPF40B-207ENST00000548399 SUCLG2Q96I99 432 aa17.4■□□□□ 0.38
PRPF40B-207ENST00000548399 USP44Q9H0E7 712 aa17.4■□□□□ 0.38
PRPF40B-207ENST00000548399 NMRK2Q9NPI5 230 aa17.4■□□□□ 0.38
PRPF40B-207ENST00000548399 BSDC1Q9NW68 430 aaPredicted RBP17.4■□□□□ 0.38
PRPF40B-207ENST00000548399 FZD9O00144 591 aa17.39■□□□□ 0.37
PRPF40B-207ENST00000548399 KIAA2012Q0VF49 1180 aa17.39■□□□□ 0.37
PRPF40B-207ENST00000548399 CCDC57Q2TAC2 916 aa17.39■□□□□ 0.37
PRPF40B-207ENST00000548399 ATF7IPQ6VMQ6 1270 aa17.39■□□□□ 0.37
PRPF40B-207ENST00000548399 MPHOSPH8Q99549 860 aa17.39■□□□□ 0.37
PRPF40B-207ENST00000548399 PODXL2Q9NZ53 605 aa17.39■□□□□ 0.37
PRPF40B-207ENST00000548399 DUOX1Q9NRD9 1551 aa17.39■□□□□ 0.37
PRPF40B-207ENST00000548399 UFL1O94874 794 aa17.38■□□□□ 0.37
PRPF40B-207ENST00000548399 TRIM27P14373 513 aa17.38■□□□□ 0.37
PRPF40B-207ENST00000548399 WASHC4Q2M389 1173 aa17.38■□□□□ 0.37
PRPF40B-207ENST00000548399 ZKSCAN2Q63HK3 967 aa17.38■□□□□ 0.37
PRPF40B-207ENST00000548399 TBC1D16Q8TBP0 767 aa17.38■□□□□ 0.37
PRPF40B-207ENST00000548399 KAZALD1Q96I82 304 aa17.38■□□□□ 0.37
PRPF40B-207ENST00000548399 EYA3Q99504 573 aa17.38■□□□□ 0.37
PRPF40B-207ENST00000548399 POLLQ9UGP5 575 aa17.38■□□□□ 0.37
PRPF40B-207ENST00000548399 GGA1Q9UJY5 639 aa17.38■□□□□ 0.37
PRPF40B-207ENST00000548399 MYH3P11055 1940 aa17.38■□□□□ 0.37
PRPF40B-207ENST00000548399 XDHP47989 1333 aa17.38■□□□□ 0.37
PRPF40B-207ENST00000548399 ZNF541Q9H0D2 1346 aa17.38■□□□□ 0.37
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