RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 CLEC4GQ6UXB4 293 aa11.92□□□□□ -0.5
YBX3-215ENST00000544504 LDHDQ86WU2 507 aa11.92□□□□□ -0.5
YBX3-215ENST00000544504 CCDC191Q8NCU4 936 aa11.92□□□□□ -0.5
YBX3-215ENST00000544504 MYD88Q99836 296 aa11.92□□□□□ -0.5
YBX3-215ENST00000544504 ZBTB3Q9H5J0 574 aa11.92□□□□□ -0.5
YBX3-215ENST00000544504 C9orf78Q9NZ63 289 aaPredicted RBP11.92□□□□□ -0.5
YBX3-215ENST00000544504 NEURL1BA8MQ27 555 aa11.91□□□□□ -0.5
YBX3-215ENST00000544504 GNAI2P04899 355 aa11.91□□□□□ -0.5
YBX3-215ENST00000544504 SERPINB2P05120 415 aa11.91□□□□□ -0.5
YBX3-215ENST00000544504 HSPA8P11142 646 aaKnown RBP11.91□□□□□ -0.5
YBX3-215ENST00000544504 MAP2K1Q02750 393 aaPredicted RBP11.91□□□□□ -0.5
YBX3-215ENST00000544504 CWC25Q9NXE8 425 aaPredicted RBP11.91□□□□□ -0.5
YBX3-215ENST00000544504 NARFQ9UHQ1 456 aa11.91□□□□□ -0.5
YBX3-215ENST00000544504 LTBP3Q9NS15 1303 aa11.9□□□□□ -0.5
YBX3-215ENST00000544504 GRM8O00222 908 aa11.9□□□□□ -0.5
YBX3-215ENST00000544504 DDNO94850 711 aaPredicted RBP11.9□□□□□ -0.5
YBX3-215ENST00000544504 HSP90B1P14625 803 aaKnown RBP11.9□□□□□ -0.5
YBX3-215ENST00000544504 GCKRQ14397 625 aa11.9□□□□□ -0.5
YBX3-215ENST00000544504 PARP10Q53GL7 1025 aa11.9□□□□□ -0.5
YBX3-215ENST00000544504 ISCA1Q9BUE6 129 aa11.9□□□□□ -0.5
YBX3-215ENST00000544504 PDZRN3Q9UPQ7 1066 aa11.9□□□□□ -0.5
YBX3-215ENST00000544504 TBC1D2BQ9UPU7 963 aa11.9□□□□□ -0.5
YBX3-215ENST00000544504 DLEC1Q9Y238 1755 aa11.9□□□□□ -0.51
YBX3-215ENST00000544504 UTYO14607 1347 aa11.89□□□□□ -0.51
YBX3-215ENST00000544504 TNRC18O15417 2968 aaPredicted RBP11.89□□□□□ -0.51
YBX3-215ENST00000544504 RASSF10A6NK89 507 aa11.89□□□□□ -0.51
YBX3-215ENST00000544504 CCDC85CA6NKD9 419 aa11.89□□□□□ -0.51
YBX3-215ENST00000544504 C21orf2O43822 256 aa11.89□□□□□ -0.51
YBX3-215ENST00000544504 HMMRO75330 724 aa11.89□□□□□ -0.51
YBX3-215ENST00000544504 CAMTA2O94983 1202 aa11.89□□□□□ -0.51
YBX3-215ENST00000544504 ITGBL1O95965 494 aaPredicted RBP11.89□□□□□ -0.51
YBX3-215ENST00000544504 IGKV5-2P06315 115 aa11.89□□□□□ -0.51
YBX3-215ENST00000544504 RPAP2Q8IXW5 612 aaPredicted RBP11.89□□□□□ -0.51
YBX3-215ENST00000544504 MEIS3Q99687 375 aa11.89□□□□□ -0.51
YBX3-215ENST00000544504 USP44Q9H0E7 712 aa11.89□□□□□ -0.51
YBX3-215ENST00000544504 TAOK3Q9H2K8 898 aa11.89□□□□□ -0.51
YBX3-215ENST00000544504 RWDD1Q9H446 243 aaPredicted RBP11.89□□□□□ -0.51
YBX3-215ENST00000544504 NRXN2Q9P2S2 1712 aa11.89□□□□□ -0.51
YBX3-215ENST00000544504 CWF19L2Q2TBE0 894 aaKnown RBP11.88□□□□□ -0.51
YBX3-215ENST00000544504 DEFB115Q30KQ5 88 aa11.88□□□□□ -0.51
YBX3-215ENST00000544504 L3MBTL3Q96JM7 780 aaPredicted RBP11.88□□□□□ -0.51
YBX3-215ENST00000544504 TAF1DQ9H5J8 278 aaPredicted RBP11.88□□□□□ -0.51
YBX3-215ENST00000544504 SCN7AQ01118 1682 aa11.87□□□□□ -0.51
YBX3-215ENST00000544504 ANKRD36CQ5JPF3 1778 aa11.87□□□□□ -0.51
YBX3-215ENST00000544504 BCORQ6W2J9 1755 aa11.87□□□□□ -0.51
YBX3-215ENST00000544504 ATP5J2-PTCD1G3V325 749 aa11.87□□□□□ -0.51
YBX3-215ENST00000544504 PDE6BP35913 854 aa11.87□□□□□ -0.51
YBX3-215ENST00000544504 PPP1R42Q7Z4L9 355 aa11.87□□□□□ -0.51
YBX3-215ENST00000544504 ZNF34Q8IZ26 560 aa11.87□□□□□ -0.51
YBX3-215ENST00000544504 ZNF622Q969S3 477 aaKnown RBP eCLIP11.87□□□□□ -0.51
YBX3-215ENST00000544504 BRIP1Q9BX63 1249 aa11.87□□□□□ -0.51
YBX3-215ENST00000544504 BCL2L12Q9HB09 334 aa11.87□□□□□ -0.51
YBX3-215ENST00000544504 AFDNP55196 1824 aaKnown RBP11.87□□□□□ -0.51
YBX3-215ENST00000544504 CARMIL3Q8ND23 1372 aa11.87□□□□□ -0.51
YBX3-215ENST00000544504 NUP98P52948 1817 aa11.86□□□□□ -0.51
YBX3-215ENST00000544504 PCCAP05165 728 aaPredicted RBP11.86□□□□□ -0.51
YBX3-215ENST00000544504 HDAC1Q13547 482 aaPredicted RBP11.86□□□□□ -0.51
YBX3-215ENST00000544504 HLFQ16534 295 aa11.86□□□□□ -0.51
YBX3-215ENST00000544504 SOGA3Q5TF21 947 aa11.86□□□□□ -0.51
YBX3-215ENST00000544504 CENPQQ7L2Z9 268 aaPredicted RBP11.86□□□□□ -0.51
YBX3-215ENST00000544504 NLRP10Q86W26 655 aa11.86□□□□□ -0.51
YBX3-215ENST00000544504 ZNF219Q9P2Y4 722 aaPredicted RBP11.86□□□□□ -0.51
YBX3-215ENST00000544504 WDR33Q9C0J8 1336 aaKnown RBP11.86□□□□□ -0.51
YBX3-215ENST00000544504 H7C1W4 665 aa11.85□□□□□ -0.51
YBX3-215ENST00000544504 ANKRD44Q8N8A2 993 aa11.85□□□□□ -0.51
YBX3-215ENST00000544504 ZBTB38Q8NAP3 1195 aaPredicted RBP11.85□□□□□ -0.51
YBX3-215ENST00000544504 BEGAINQ9BUH8 593 aa11.85□□□□□ -0.51
YBX3-215ENST00000544504 NYXQ9GZU5 481 aa11.85□□□□□ -0.51
YBX3-215ENST00000544504 NIP7Q9Y221 180 aaKnown RBP eCLIP11.85□□□□□ -0.51
YBX3-215ENST00000544504 PCDHB15Q9Y5E8 787 aa11.85□□□□□ -0.51
YBX3-215ENST00000544504 LRRFIP2Q9Y608 721 aaKnown RBP11.85□□□□□ -0.51
YBX3-215ENST00000544504 CDHR2Q9BYE9 1310 aa11.85□□□□□ -0.51
YBX3-215ENST00000544504 NBPF7P0C2Y1 421 aaPredicted RBP11.84□□□□□ -0.51
YBX3-215ENST00000544504 GPTP24298 496 aa11.84□□□□□ -0.51
YBX3-215ENST00000544504 MTX1Q13505 466 aa11.84□□□□□ -0.51
YBX3-215ENST00000544504 EAPPQ56P03 285 aaPredicted RBP11.84□□□□□ -0.51
YBX3-215ENST00000544504 B4GALNT3Q6L9W6 998 aa11.84□□□□□ -0.51
YBX3-215ENST00000544504 CEP85Q6P2H3 762 aa11.84□□□□□ -0.51
YBX3-215ENST00000544504 UBE3BQ7Z3V4 1068 aa11.84□□□□□ -0.51
YBX3-215ENST00000544504 PNMA8AQ86V59 439 aaPredicted RBP11.84□□□□□ -0.51
YBX3-215ENST00000544504 SETDB2Q96T68 719 aa11.84□□□□□ -0.51
YBX3-215ENST00000544504 UTP14AQ9BVJ6 771 aaKnown RBP11.84□□□□□ -0.51
YBX3-215ENST00000544504 TRMT112Q9UI30 125 aaKnown RBP11.84□□□□□ -0.51
YBX3-215ENST00000544504 CLEC11AQ9Y240 323 aa11.84□□□□□ -0.51
YBX3-215ENST00000544504 CCDC88AQ3V6T2 1871 aa11.83□□□□□ -0.52
YBX3-215ENST00000544504 ATP8B2P98198 1209 aa11.83□□□□□ -0.52
YBX3-215ENST00000544504 BICDL1Q6ZP65 573 aa11.83□□□□□ -0.52
YBX3-215ENST00000544504 CNTROBQ8N137 903 aa11.83□□□□□ -0.52
YBX3-215ENST00000544504 CNKSR1Q969H4 720 aa11.83□□□□□ -0.52
YBX3-215ENST00000544504 GCC1Q96CN9 775 aa11.83□□□□□ -0.52
YBX3-215ENST00000544504 C1orf115Q9H7X2 142 aa11.83□□□□□ -0.52
YBX3-215ENST00000544504 HACL1Q9UJ83 578 aa11.83□□□□□ -0.52
YBX3-215ENST00000544504 ABT1Q9ULW3 272 aaKnown RBP11.83□□□□□ -0.52
YBX3-215ENST00000544504 SH3TC1Q8TE82 1336 aa11.83□□□□□ -0.52
YBX3-215ENST00000544504 DICER1Q9UPY3 1922 aaKnown RBP11.82□□□□□ -0.52
YBX3-215ENST00000544504 EPHX2P34913 555 aa11.82□□□□□ -0.52
YBX3-215ENST00000544504 TPTE2Q6XPS3 522 aa11.82□□□□□ -0.52
YBX3-215ENST00000544504 PLA2G12BQ9BX93 195 aa11.82□□□□□ -0.52
YBX3-215ENST00000544504 FER1L6Q2WGJ9 1857 aa11.82□□□□□ -0.52
YBX3-215ENST00000544504 SCN4AP35499 1836 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms