RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 RTFDC1Q9BY42 306 aaPredicted RBP18.02■□□□□ 0.48
SYNE1-235ENST00000537033 ITGBL1O95965 494 aaPredicted RBP18.01■□□□□ 0.47
SYNE1-235ENST00000537033 HSPA1AP0DMV8 641 aaKnown RBP18.01■□□□□ 0.47
SYNE1-235ENST00000537033 HSPA1BP0DMV9 641 aaKnown RBP18.01■□□□□ 0.47
SYNE1-235ENST00000537033 MAP1SQ66K74 1059 aaPredicted RBP18.01■□□□□ 0.47
SYNE1-235ENST00000537033 RIC3Q7Z5B4 369 aa18.01■□□□□ 0.47
SYNE1-235ENST00000537033 CNTROBQ8N137 903 aa18.01■□□□□ 0.47
SYNE1-235ENST00000537033 ZNRF3Q9ULT6 936 aa18.01■□□□□ 0.47
SYNE1-235ENST00000537033 CNTNAP1P78357 1384 aa18.01■□□□□ 0.47
SYNE1-235ENST00000537033 HSP90B1P14625 803 aaKnown RBP18■□□□□ 0.47
SYNE1-235ENST00000537033 SCNN1DP51172 638 aa18■□□□□ 0.47
SYNE1-235ENST00000537033 FAM89AQ96GI7 184 aa18■□□□□ 0.47
SYNE1-235ENST00000537033 ELL2O00472 640 aaPredicted RBP17.99■□□□□ 0.47
SYNE1-235ENST00000537033 KIAA2012Q0VF49 1180 aa17.99■□□□□ 0.47
SYNE1-235ENST00000537033 USP50Q70EL3 339 aaPredicted RBP17.99■□□□□ 0.47
SYNE1-235ENST00000537033 EPS15P42566 896 aa17.98■□□□□ 0.47
SYNE1-235ENST00000537033 TRIM28Q13263 835 aaKnown RBP17.98■□□□□ 0.47
SYNE1-235ENST00000537033 DUOX1Q9NRD9 1551 aa17.97■□□□□ 0.47
SYNE1-235ENST00000537033 IRS4O14654 1257 aaPredicted RBP17.97■□□□□ 0.47
SYNE1-235ENST00000537033 DDX58O95786 925 aaKnown RBP17.97■□□□□ 0.47
SYNE1-235ENST00000537033 SF3B3Q15393 1217 aaKnown RBP17.97■□□□□ 0.47
SYNE1-235ENST00000537033 RTL5Q5HYW3 569 aaPredicted RBP17.97■□□□□ 0.47
SYNE1-235ENST00000537033 COL13A1Q5TAT6 717 aaPredicted RBP17.97■□□□□ 0.47
SYNE1-235ENST00000537033 CCDC30Q5VVM6 783 aa17.97■□□□□ 0.47
SYNE1-235ENST00000537033 CIAPIN1Q6FI81 312 aa17.97■□□□□ 0.47
SYNE1-235ENST00000537033 GPRC5DQ9NZD1 345 aa17.97■□□□□ 0.47
SYNE1-235ENST00000537033 CDHR2Q9BYE9 1310 aa17.97■□□□□ 0.47
SYNE1-235ENST00000537033 CXCL9Q07325 125 aa17.96■□□□□ 0.47
SYNE1-235ENST00000537033 TNIP1Q15025 636 aa17.96■□□□□ 0.47
SYNE1-235ENST00000537033 ZBTB38Q8NAP3 1195 aaPredicted RBP17.96■□□□□ 0.47
SYNE1-235ENST00000537033 BCL2L13Q9BXK5 485 aa17.96■□□□□ 0.47
SYNE1-235ENST00000537033 PHAXQ9H814 394 aaKnown RBP17.96■□□□□ 0.47
SYNE1-235ENST00000537033 ADARB2Q9NS39 739 aaKnown RBP17.96■□□□□ 0.47
SYNE1-235ENST00000537033 TRPM7Q96QT4 1865 aa17.96■□□□□ 0.47
SYNE1-235ENST00000537033 ZEB1P37275 1124 aaPredicted RBP17.95■□□□□ 0.46
SYNE1-235ENST00000537033 TNS4Q8IZW8 715 aa17.95■□□□□ 0.46
SYNE1-235ENST00000537033 C8orf58Q8NAV2 365 aa17.95■□□□□ 0.46
SYNE1-235ENST00000537033 CELF1Q92879 486 aaKnown RBP17.95■□□□□ 0.46
SYNE1-235ENST00000537033 MYD88Q99836 296 aa17.95■□□□□ 0.46
SYNE1-235ENST00000537033 ABT1Q9ULW3 272 aaKnown RBP17.95■□□□□ 0.46
SYNE1-235ENST00000537033 NSFL1CQ9UNZ2 370 aaKnown RBP17.95■□□□□ 0.46
SYNE1-235ENST00000537033 PCNTO95613 3336 aa17.95■□□□□ 0.46
SYNE1-235ENST00000537033 RAD17O75943 681 aa17.94■□□□□ 0.46
SYNE1-235ENST00000537033 GMPSP49915 693 aaPredicted RBP17.94■□□□□ 0.46
SYNE1-235ENST00000537033 CCDC191Q8NCU4 936 aa17.94■□□□□ 0.46
SYNE1-235ENST00000537033 AIDAQ96BJ3 306 aa17.94■□□□□ 0.46
SYNE1-235ENST00000537033 RASSF10A6NK89 507 aa17.93■□□□□ 0.46
SYNE1-235ENST00000537033 C6orf229H3BNL8 230 aa17.93■□□□□ 0.46
SYNE1-235ENST00000537033 VEGFBP49765 207 aa17.93■□□□□ 0.46
SYNE1-235ENST00000537033 WASHC4Q2M389 1173 aa17.93■□□□□ 0.46
SYNE1-235ENST00000537033 STK31Q9BXU1 1019 aa17.93■□□□□ 0.46
SYNE1-235ENST00000537033 CWC25Q9NXE8 425 aaPredicted RBP17.93■□□□□ 0.46
SYNE1-235ENST00000537033 CCDC27Q2M243 656 aa17.92■□□□□ 0.46
SYNE1-235ENST00000537033 DEFB115Q30KQ5 88 aa17.92■□□□□ 0.46
SYNE1-235ENST00000537033 CCDC152Q4G0S7 254 aa17.92■□□□□ 0.46
SYNE1-235ENST00000537033 EYA3Q99504 573 aa17.92■□□□□ 0.46
SYNE1-235ENST00000537033 METTL22Q9BUU2 404 aaPredicted RBP17.92■□□□□ 0.46
SYNE1-235ENST00000537033 PCCAP05165 728 aaPredicted RBP17.91■□□□□ 0.46
SYNE1-235ENST00000537033 RPS8P62241 208 aaKnown RBP17.91■□□□□ 0.46
SYNE1-235ENST00000537033 TSR2Q969E8 191 aaKnown RBP17.91■□□□□ 0.46
SYNE1-235ENST00000537033 COL4A1P02462 1669 aa17.9■□□□□ 0.46
SYNE1-235ENST00000537033 GPSM2P81274 684 aa17.9■□□□□ 0.46
SYNE1-235ENST00000537033 NEXNQ0ZGT2 675 aa17.9■□□□□ 0.46
SYNE1-235ENST00000537033 CCDC184Q52MB2 194 aa17.9■□□□□ 0.46
SYNE1-235ENST00000537033 MRS2Q9HD23 443 aa17.9■□□□□ 0.46
SYNE1-235ENST00000537033 MAP3K2Q9Y2U5 619 aa17.9■□□□□ 0.46
SYNE1-235ENST00000537033 MYH3P11055 1940 aa17.9■□□□□ 0.46
SYNE1-235ENST00000537033 YDJCA8MPS7 323 aa17.89■□□□□ 0.45
SYNE1-235ENST00000537033 H7C1D1 291 aa17.89■□□□□ 0.45
SYNE1-235ENST00000537033 RIMBP2O15034 1052 aa17.89■□□□□ 0.45
SYNE1-235ENST00000537033 ANP32CO43423 234 aa17.89■□□□□ 0.45
SYNE1-235ENST00000537033 PDE8AO60658 829 aa17.89■□□□□ 0.45
SYNE1-235ENST00000537033 PAXIP1Q6ZW49 1069 aaPredicted RBP17.89■□□□□ 0.45
SYNE1-235ENST00000537033 WWC1Q8IX03 1113 aa17.89■□□□□ 0.45
SYNE1-235ENST00000537033 TSPYL6Q8N831 410 aa17.89■□□□□ 0.45
SYNE1-235ENST00000537033 DBNDD1Q9H9R9 158 aa17.89■□□□□ 0.45
SYNE1-235ENST00000537033 ANKIB1Q9P2G1 1089 aa17.89■□□□□ 0.45
SYNE1-235ENST00000537033 G3V3G9 751 aa17.88■□□□□ 0.45
SYNE1-235ENST00000537033 TRAF5O00463 557 aa17.88■□□□□ 0.45
SYNE1-235ENST00000537033 TWISTNBQ3B726 338 aaPredicted RBP17.88■□□□□ 0.45
SYNE1-235ENST00000537033 DCAF8Q5TAQ9 597 aa17.88■□□□□ 0.45
SYNE1-235ENST00000537033 KSR2Q6VAB6 950 aa17.88■□□□□ 0.45
SYNE1-235ENST00000537033 ZC3H15Q8WU90 426 aaKnown RBP17.88■□□□□ 0.45
SYNE1-235ENST00000537033 POLLQ9UGP5 575 aa17.88■□□□□ 0.45
SYNE1-235ENST00000537033 CNOT7Q9UIV1 285 aaKnown RBP17.88■□□□□ 0.45
SYNE1-235ENST00000537033 IL16Q14005 1332 aa17.88■□□□□ 0.45
SYNE1-235ENST00000537033 ECE2O60344 883 aa17.87■□□□□ 0.45
SYNE1-235ENST00000537033 ECE1P42892 770 aa17.87■□□□□ 0.45
SYNE1-235ENST00000537033 MICALL2Q8IY33 904 aa17.87■□□□□ 0.45
SYNE1-235ENST00000537033 TBC1D16Q8TBP0 767 aa17.87■□□□□ 0.45
SYNE1-235ENST00000537033 DPF2Q92785 391 aa17.87■□□□□ 0.45
SYNE1-235ENST00000537033 ZC3H12CQ9C0D7 883 aaKnown RBP17.87■□□□□ 0.45
SYNE1-235ENST00000537033 SEC31BQ9NQW1 1179 aa17.87■□□□□ 0.45
SYNE1-235ENST00000537033 WDR33Q9C0J8 1336 aaKnown RBP17.87■□□□□ 0.45
SYNE1-235ENST00000537033 THSD7BQ9C0I4 1608 aa17.87■□□□□ 0.45
SYNE1-235ENST00000537033 SPEF2Q9C093 1822 aa17.86■□□□□ 0.45
SYNE1-235ENST00000537033 PI4KAP2A4QPH2 592 aa17.86■□□□□ 0.45
SYNE1-235ENST00000537033 PSMD14O00487 310 aa17.86■□□□□ 0.45
SYNE1-235ENST00000537033 FOXN1O15353 648 aa17.86■□□□□ 0.45
SYNE1-235ENST00000537033 UFL1O94874 794 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms