RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 GRAPLQ8TC17 118 aaPredicted RBP15□□□□□ -0.01
HMGCS1-204ENST00000507293 ISCA1Q9BUE6 129 aa15□□□□□ -0.01
HMGCS1-204ENST00000507293 RTFDC1Q9BY42 306 aaPredicted RBP15□□□□□ -0.01
HMGCS1-204ENST00000507293 VPS33BQ9H267 617 aa15□□□□□ -0.01
HMGCS1-204ENST00000507293 ZNF853P0CG23 659 aa14.99□□□□□ -0.01
HMGCS1-204ENST00000507293 MPNDQ8N594 471 aa14.99□□□□□ -0.01
HMGCS1-204ENST00000507293 HYPKQ9NX55 129 aa14.99□□□□□ -0.01
HMGCS1-204ENST00000507293 FAM89AQ96GI7 184 aa14.98□□□□□ -0.01
HMGCS1-204ENST00000507293 IFT57Q9NWB7 429 aa14.98□□□□□ -0.01
HMGCS1-204ENST00000507293 ZNRF3Q9ULT6 936 aa14.98□□□□□ -0.01
HMGCS1-204ENST00000507293 GNAI1P63096 354 aa14.97□□□□□ -0.01
HMGCS1-204ENST00000507293 CXCL9Q07325 125 aa14.97□□□□□ -0.01
HMGCS1-204ENST00000507293 KIAA2012Q0VF49 1180 aa14.97□□□□□ -0.01
HMGCS1-204ENST00000507293 TNS4Q8IZW8 715 aa14.97□□□□□ -0.01
HMGCS1-204ENST00000507293 ELL2O00472 640 aaPredicted RBP14.96□□□□□ -0.01
HMGCS1-204ENST00000507293 VEGFBP49765 207 aa14.96□□□□□ -0.01
HMGCS1-204ENST00000507293 CALD1Q05682 793 aaKnown RBP14.96□□□□□ -0.01
HMGCS1-204ENST00000507293 RTL5Q5HYW3 569 aaPredicted RBP14.96□□□□□ -0.01
HMGCS1-204ENST00000507293 USP50Q70EL3 339 aaPredicted RBP14.96□□□□□ -0.01
HMGCS1-204ENST00000507293 TMC4Q7Z404 712 aa14.96□□□□□ -0.01
HMGCS1-204ENST00000507293 RIC3Q7Z5B4 369 aa14.96□□□□□ -0.01
HMGCS1-204ENST00000507293 PHAXQ9H814 394 aaKnown RBP14.96□□□□□ -0.01
HMGCS1-204ENST00000507293 GPRC5DQ9NZD1 345 aa14.96□□□□□ -0.01
HMGCS1-204ENST00000507293 GMPSP49915 693 aaPredicted RBP14.95□□□□□ -0.02
HMGCS1-204ENST00000507293 FMR1Q06787 632 aaKnown RBP eCLIP14.95□□□□□ -0.021e-7■■■□□ 18.8
HMGCS1-204ENST00000507293 GOLGA2Q08379 1002 aa14.95□□□□□ -0.02
HMGCS1-204ENST00000507293 SF3B3Q15393 1217 aaKnown RBP14.95□□□□□ -0.02
HMGCS1-204ENST00000507293 CIAPIN1Q6FI81 312 aa14.95□□□□□ -0.02
HMGCS1-204ENST00000507293 CELF1Q92879 486 aaKnown RBP14.95□□□□□ -0.02
HMGCS1-204ENST00000507293 ADARB2Q9NS39 739 aaKnown RBP14.95□□□□□ -0.02
HMGCS1-204ENST00000507293 THSD7BQ9C0I4 1608 aa14.95□□□□□ -0.02
HMGCS1-204ENST00000507293 RASSF10A6NK89 507 aa14.94□□□□□ -0.02
HMGCS1-204ENST00000507293 IRS4O14654 1257 aaPredicted RBP14.94□□□□□ -0.02
HMGCS1-204ENST00000507293 RAD17O75943 681 aa14.94□□□□□ -0.02
HMGCS1-204ENST00000507293 TRIM28Q13263 835 aaKnown RBP14.94□□□□□ -0.02
HMGCS1-204ENST00000507293 C8orf58Q8NAV2 365 aa14.94□□□□□ -0.02
HMGCS1-204ENST00000507293 ABT1Q9ULW3 272 aaKnown RBP14.94□□□□□ -0.02
HMGCS1-204ENST00000507293 YDJCA8MPS7 323 aa14.93□□□□□ -0.02
HMGCS1-204ENST00000507293 FOXN1O15353 648 aa14.93□□□□□ -0.02
HMGCS1-204ENST00000507293 CAPN15O75808 1086 aa14.93□□□□□ -0.02
HMGCS1-204ENST00000507293 DEFB115Q30KQ5 88 aa14.93□□□□□ -0.02
HMGCS1-204ENST00000507293 MYD88Q99836 296 aa14.93□□□□□ -0.02
HMGCS1-204ENST00000507293 SPEF2Q9C093 1822 aa14.93□□□□□ -0.02
HMGCS1-204ENST00000507293 MYH3P11055 1940 aa14.93□□□□□ -0.02
HMGCS1-204ENST00000507293 CDHR2Q9BYE9 1310 aa14.92□□□□□ -0.02
HMGCS1-204ENST00000507293 TRAF5O00463 557 aa14.92□□□□□ -0.02
HMGCS1-204ENST00000507293 GPSM2P81274 684 aa14.92□□□□□ -0.02
HMGCS1-204ENST00000507293 TNIP1Q15025 636 aa14.92□□□□□ -0.02
HMGCS1-204ENST00000507293 CCDC184Q52MB2 194 aa14.92□□□□□ -0.02
HMGCS1-204ENST00000507293 ZBTB38Q8NAP3 1195 aaPredicted RBP14.92□□□□□ -0.02
HMGCS1-204ENST00000507293 BCL2L13Q9BXK5 485 aa14.92□□□□□ -0.02
HMGCS1-204ENST00000507293 NSFL1CQ9UNZ2 370 aaKnown RBP14.92□□□□□ -0.02
HMGCS1-204ENST00000507293 SCN9AQ15858 1988 aa14.91□□□□□ -0.02
HMGCS1-204ENST00000507293 AIDAQ96BJ3 306 aa14.91□□□□□ -0.02
HMGCS1-204ENST00000507293 WDR33Q9C0J8 1336 aaKnown RBP14.91□□□□□ -0.02
HMGCS1-204ENST00000507293 PSME4Q14997 1843 aa14.9□□□□□ -0.02
HMGCS1-204ENST00000507293 SHTN1A0MZ66 631 aa14.9□□□□□ -0.02
HMGCS1-204ENST00000507293 C6orf229H3BNL8 230 aa14.9□□□□□ -0.02
HMGCS1-204ENST00000507293 RIMBP2O15034 1052 aa14.9□□□□□ -0.02
HMGCS1-204ENST00000507293 WASHC4Q2M389 1173 aa14.9□□□□□ -0.02
HMGCS1-204ENST00000507293 CCDC30Q5VVM6 783 aa14.9□□□□□ -0.02
HMGCS1-204ENST00000507293 TSPYL6Q8N831 410 aa14.9□□□□□ -0.02
HMGCS1-204ENST00000507293 DBNDD1Q9H9R9 158 aa14.9□□□□□ -0.02
HMGCS1-204ENST00000507293 POLLQ9UGP5 575 aa14.9□□□□□ -0.02
HMGCS1-204ENST00000507293 PCCAP05165 728 aaPredicted RBP14.89□□□□□ -0.03
HMGCS1-204ENST00000507293 RPS8P62241 208 aaKnown RBP14.89□□□□□ -0.03
HMGCS1-204ENST00000507293 CST9Q5W186 159 aa14.89□□□□□ -0.03
HMGCS1-204ENST00000507293 PAXIP1Q6ZW49 1069 aaPredicted RBP14.89□□□□□ -0.03
HMGCS1-204ENST00000507293 CCDC191Q8NCU4 936 aa14.89□□□□□ -0.03
HMGCS1-204ENST00000507293 TRPM4Q8TD43 1214 aa14.89□□□□□ -0.03
HMGCS1-204ENST00000507293 JARID2Q92833 1246 aaPredicted RBP14.89□□□□□ -0.03
HMGCS1-204ENST00000507293 TSR2Q969E8 191 aaKnown RBP14.89□□□□□ -0.03
HMGCS1-204ENST00000507293 GPR101Q96P66 508 aaPredicted RBP14.89□□□□□ -0.03
HMGCS1-204ENST00000507293 SEC31BQ9NQW1 1179 aa14.89□□□□□ -0.03
HMGCS1-204ENST00000507293 WBP1LQ9NX94 342 aa14.89□□□□□ -0.03
HMGCS1-204ENST00000507293 CWC25Q9NXE8 425 aaPredicted RBP14.89□□□□□ -0.03
HMGCS1-204ENST00000507293 PCNTO95613 3336 aa14.88□□□□□ -0.03
HMGCS1-204ENST00000507293 POLR2AP24928 1970 aaKnown RBP14.88□□□□□ -0.03
HMGCS1-204ENST00000507293 DDX58O95786 925 aaKnown RBP14.88□□□□□ -0.03
HMGCS1-204ENST00000507293 HSP90B1P14625 803 aaKnown RBP14.88□□□□□ -0.03
HMGCS1-204ENST00000507293 CTCFP49711 727 aaPredicted RBP14.88□□□□□ -0.03
HMGCS1-204ENST00000507293 HIRAP54198 1017 aaPredicted RBP14.88□□□□□ -0.03
HMGCS1-204ENST00000507293 MICALL2Q8IY33 904 aa14.88□□□□□ -0.03
HMGCS1-204ENST00000507293 EYA3Q99504 573 aa14.88□□□□□ -0.03
HMGCS1-204ENST00000507293 METTL22Q9BUU2 404 aaPredicted RBP14.88□□□□□ -0.03
HMGCS1-204ENST00000507293 GLIS2Q9BZE0 524 aaPredicted RBP14.88□□□□□ -0.03
HMGCS1-204ENST00000507293 CNOT7Q9UIV1 285 aaKnown RBP14.88□□□□□ -0.03
HMGCS1-204ENST00000507293 ZBTB12Q9Y330 459 aaPredicted RBP14.88□□□□□ -0.03
HMGCS1-204ENST00000507293 H7C1D1 291 aa14.87□□□□□ -0.03
HMGCS1-204ENST00000507293 PSMD14O00487 310 aa14.87□□□□□ -0.03
HMGCS1-204ENST00000507293 ECE2O60344 883 aa14.87□□□□□ -0.03
HMGCS1-204ENST00000507293 PDE8AO60658 829 aa14.87□□□□□ -0.03
HMGCS1-204ENST00000507293 DOK7Q18PE1 504 aa14.87□□□□□ -0.03
HMGCS1-204ENST00000507293 CCDC152Q4G0S7 254 aa14.87□□□□□ -0.03
HMGCS1-204ENST00000507293 CYP4F22Q6NT55 531 aa14.87□□□□□ -0.03
HMGCS1-204ENST00000507293 TBC1D16Q8TBP0 767 aa14.87□□□□□ -0.03
HMGCS1-204ENST00000507293 CAPNS2Q96L46 248 aa14.87□□□□□ -0.03
HMGCS1-204ENST00000507293 CCDC85AQ96PX6 553 aaPredicted RBP14.87□□□□□ -0.03
HMGCS1-204ENST00000507293 CHMP4AQ9BY43 222 aa14.87□□□□□ -0.03
HMGCS1-204ENST00000507293 PRDM10Q9NQV6 1147 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms