RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 LAMB2P55268 1798 aa20.22■□□□□ 0.83
LIME1-209ENST00000494776 CCDC152Q4G0S7 254 aa20.22■□□□□ 0.83
LIME1-209ENST00000494776 GRIPAP1Q4V328 841 aa20.22■□□□□ 0.83
LIME1-209ENST00000494776 BEND3Q5T5X7 828 aa20.22■□□□□ 0.83
LIME1-209ENST00000494776 ATP6V0A2Q9Y487 856 aa20.22■□□□□ 0.83
LIME1-209ENST00000494776 H7C1W4 665 aa20.21■□□□□ 0.83
LIME1-209ENST00000494776 PRELPP51888 382 aa20.21■□□□□ 0.83
LIME1-209ENST00000494776 CCDC85AQ96PX6 553 aaPredicted RBP20.21■□□□□ 0.83
LIME1-209ENST00000494776 ZBED9Q6R2W3 1325 aa20.21■□□□□ 0.83
LIME1-209ENST00000494776 FER1L6Q2WGJ9 1857 aa20.2■□□□□ 0.82
LIME1-209ENST00000494776 CTSWP56202 376 aa20.2■□□□□ 0.82
LIME1-209ENST00000494776 TMC4Q7Z404 712 aa20.2■□□□□ 0.82
LIME1-209ENST00000494776 SP8Q8IXZ3 490 aa20.2■□□□□ 0.82
LIME1-209ENST00000494776 SRCIN1Q9C0H9 1055 aa20.2■□□□□ 0.82
LIME1-209ENST00000494776 ZNF277Q9NRM2 450 aaPredicted RBP20.2■□□□□ 0.82
LIME1-209ENST00000494776 CELF1Q92879 486 aaKnown RBP20.19■□□□□ 0.82
LIME1-209ENST00000494776 C9orf78Q9NZ63 289 aaPredicted RBP20.19■□□□□ 0.82
LIME1-209ENST00000494776 SBF1O95248 1867 aa20.19■□□□□ 0.82
LIME1-209ENST00000494776 ALDH1L1O75891 902 aa20.18■□□□□ 0.82
LIME1-209ENST00000494776 PSMD1Q99460 953 aa20.18■□□□□ 0.82
LIME1-209ENST00000494776 ZC3H4Q9UPT8 1303 aaKnown RBP20.18■□□□□ 0.82
LIME1-209ENST00000494776 RARSP54136 660 aaKnown RBP20.17■□□□□ 0.82
LIME1-209ENST00000494776 RPS8P62241 208 aaKnown RBP20.17■□□□□ 0.82
LIME1-209ENST00000494776 SEC31BQ9NQW1 1179 aa20.17■□□□□ 0.82
LIME1-209ENST00000494776 KDM2BQ8NHM5 1336 aa20.17■□□□□ 0.82
LIME1-209ENST00000494776 IARSP41252 1262 aaKnown RBP20.16■□□□□ 0.82
LIME1-209ENST00000494776 DPY19L2Q6NUT2 758 aa20.16■□□□□ 0.82
LIME1-209ENST00000494776 DPP8Q6V1X1 898 aaPredicted RBP20.16■□□□□ 0.82
LIME1-209ENST00000494776 SLC51AQ86UW1 340 aa20.16■□□□□ 0.82
LIME1-209ENST00000494776 MPNDQ8N594 471 aa20.16■□□□□ 0.82
LIME1-209ENST00000494776 TTLL11Q8NHH1 800 aa20.16■□□□□ 0.82
LIME1-209ENST00000494776 NOB1Q9ULX3 412 aaKnown RBP20.16■□□□□ 0.82
LIME1-209ENST00000494776 GRM8O00222 908 aa20.15■□□□□ 0.82
LIME1-209ENST00000494776 CASP7P55210 303 aa20.15■□□□□ 0.82
LIME1-209ENST00000494776 ANKRD18AQ8IVF6 992 aa20.15■□□□□ 0.82
LIME1-209ENST00000494776 SUPT20HQ8NEM7 779 aa20.15■□□□□ 0.82
LIME1-209ENST00000494776 CDC5LQ99459 802 aaKnown RBP20.15■□□□□ 0.82
LIME1-209ENST00000494776 PLA2G12BQ9BX93 195 aa20.15■□□□□ 0.82
LIME1-209ENST00000494776 CCDC88AQ3V6T2 1871 aa20.15■□□□□ 0.82
LIME1-209ENST00000494776 JDP2Q8WYK2 163 aa20.14■□□□□ 0.81
LIME1-209ENST00000494776 GREM2Q9H772 168 aa20.14■□□□□ 0.81
LIME1-209ENST00000494776 KIF16BQ96L93 1317 aa20.13■□□□□ 0.81
LIME1-209ENST00000494776 BRPF1P55201 1214 aaPredicted RBP20.13■□□□□ 0.81
LIME1-209ENST00000494776 LARGE2Q8N3Y3 721 aa20.13■□□□□ 0.81
LIME1-209ENST00000494776 API5Q9BZZ5 524 aaKnown RBP20.13■□□□□ 0.81
LIME1-209ENST00000494776 NSFL1CQ9UNZ2 370 aaKnown RBP20.13■□□□□ 0.81
LIME1-209ENST00000494776 CHMP3Q9Y3E7 222 aa20.13■□□□□ 0.81
LIME1-209ENST00000494776 TAF1P21675 1872 aa20.13■□□□□ 0.81
LIME1-209ENST00000494776 GLTPD2A6NH11 291 aa20.12■□□□□ 0.81
LIME1-209ENST00000494776 SNED1Q8TER0 1413 aa20.11■□□□□ 0.81
LIME1-209ENST00000494776 TIAM2Q8IVF5 1701 aa20.11■□□□□ 0.81
LIME1-209ENST00000494776 PPIP5K2O43314 1243 aa20.11■□□□□ 0.81
LIME1-209ENST00000494776 IPO8O15397 1037 aaKnown RBP20.1■□□□□ 0.81
LIME1-209ENST00000494776 ITGA6P23229 1130 aa20.1■□□□□ 0.81
LIME1-209ENST00000494776 IGHMBP2P38935 993 aaKnown RBP20.1■□□□□ 0.81
LIME1-209ENST00000494776 AOC3Q16853 763 aa20.1■□□□□ 0.81
LIME1-209ENST00000494776 FAM161AQ3B820 660 aa20.1■□□□□ 0.81
LIME1-209ENST00000494776 FRAT1Q92837 279 aaPredicted RBP20.1■□□□□ 0.81
LIME1-209ENST00000494776 RTFDC1Q9BY42 306 aaPredicted RBP20.1■□□□□ 0.81
LIME1-209ENST00000494776 VPS33BQ9H267 617 aa20.1■□□□□ 0.81
LIME1-209ENST00000494776 NMRK2Q9NPI5 230 aa20.1■□□□□ 0.81
LIME1-209ENST00000494776 ANKIB1Q9P2G1 1089 aa20.1■□□□□ 0.81
LIME1-209ENST00000494776 RTL9Q8NET4 1388 aa20.09■□□□□ 0.81
LIME1-209ENST00000494776 C6orf229H3BNL8 230 aa20.09■□□□□ 0.81
LIME1-209ENST00000494776 BCAR3O75815 825 aa20.09■□□□□ 0.81
LIME1-209ENST00000494776 CSF1RP07333 972 aa20.09■□□□□ 0.81
LIME1-209ENST00000494776 CCT4P50991 539 aaKnown RBP20.09■□□□□ 0.81
LIME1-209ENST00000494776 GPSM2P81274 684 aa20.09■□□□□ 0.81
LIME1-209ENST00000494776 FOXO4P98177 505 aa20.09■□□□□ 0.81
LIME1-209ENST00000494776 NIM1KQ8IY84 436 aa20.09■□□□□ 0.81
LIME1-209ENST00000494776 RRAGCQ9HB90 399 aa20.09■□□□□ 0.81
LIME1-209ENST00000494776 DICER1Q9UPY3 1922 aaKnown RBP20.09■□□□□ 0.81
LIME1-209ENST00000494776 MYH3P11055 1940 aa20.08■□□□□ 0.81
LIME1-209ENST00000494776 ANKRD18BA2A2Z9 1011 aa20.08■□□□□ 0.81
LIME1-209ENST00000494776 NBPF7P0C2Y1 421 aaPredicted RBP20.08■□□□□ 0.81
LIME1-209ENST00000494776 EIF6P56537 245 aaKnown RBP20.08■□□□□ 0.81
LIME1-209ENST00000494776 LMBR1LQ6UX01 489 aa20.08■□□□□ 0.81
LIME1-209ENST00000494776 C16orf71Q8IYS4 520 aaPredicted RBP20.08■□□□□ 0.81
LIME1-209ENST00000494776 ARHGAP45Q92619 1136 aa20.08■□□□□ 0.81
LIME1-209ENST00000494776 MPHOSPH8Q99549 860 aa20.08■□□□□ 0.81
LIME1-209ENST00000494776 COL4A1P02462 1669 aa20.07■□□□□ 0.8
LIME1-209ENST00000494776 IFIT5Q13325 482 aaKnown RBP20.07■□□□□ 0.8
LIME1-209ENST00000494776 SUCLG2Q96I99 432 aa20.07■□□□□ 0.8
LIME1-209ENST00000494776 BSDC1Q9NW68 430 aaPredicted RBP20.07■□□□□ 0.8
LIME1-209ENST00000494776 DDNO94850 711 aaPredicted RBP20.06■□□□□ 0.8
LIME1-209ENST00000494776 WASHC4Q2M389 1173 aa20.06■□□□□ 0.8
LIME1-209ENST00000494776 CCDC57Q2TAC2 916 aa20.06■□□□□ 0.8
LIME1-209ENST00000494776 TAF7LQ5H9L4 462 aa20.06■□□□□ 0.8
LIME1-209ENST00000494776 EPHA10Q5JZY3 1008 aa20.06■□□□□ 0.8
LIME1-209ENST00000494776 EYA3Q99504 573 aa20.06■□□□□ 0.8
LIME1-209ENST00000494776 GGA1Q9UJY5 639 aa20.06■□□□□ 0.8
LIME1-209ENST00000494776 UTYO14607 1347 aa20.05■□□□□ 0.8
LIME1-209ENST00000494776 FZD9O00144 591 aa20.05■□□□□ 0.8
LIME1-209ENST00000494776 KIF3CO14782 793 aa20.05■□□□□ 0.8
LIME1-209ENST00000494776 RIMBP2O15034 1052 aa20.05■□□□□ 0.8
LIME1-209ENST00000494776 UFL1O94874 794 aa20.05■□□□□ 0.8
LIME1-209ENST00000494776 KIAA2012Q0VF49 1180 aa20.05■□□□□ 0.8
LIME1-209ENST00000494776 USP44Q9H0E7 712 aa20.05■□□□□ 0.8
LIME1-209ENST00000494776 PODXL2Q9NZ53 605 aa20.05■□□□□ 0.8
LIME1-209ENST00000494776 POLLQ9UGP5 575 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms