RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 NEXNQ0ZGT2 675 aa31.58■■■□□ 2.65
UPF3A-209ENST00000492270 SPEF2Q9C093 1822 aa31.58■■■□□ 2.65
UPF3A-209ENST00000492270 TOMM70O94826 608 aa31.57■■■□□ 2.64
UPF3A-209ENST00000492270 DPY19L2Q6NUT2 758 aa31.57■■■□□ 2.64
UPF3A-209ENST00000492270 CELF1Q92879 486 aaKnown RBP31.57■■■□□ 2.64
UPF3A-209ENST00000492270 DUOX1Q9NRD9 1551 aa31.56■■■□□ 2.64
UPF3A-209ENST00000492270 ZNF541Q9H0D2 1346 aa31.56■■■□□ 2.64
UPF3A-209ENST00000492270 NEURL1BA8MQ27 555 aa31.56■■■□□ 2.64
UPF3A-209ENST00000492270 MIER1Q8N108 512 aa31.56■■■□□ 2.64
UPF3A-209ENST00000492270 DDNO94850 711 aaPredicted RBP31.55■■■□□ 2.64
UPF3A-209ENST00000492270 GRIPAP1Q4V328 841 aa31.55■■■□□ 2.64
UPF3A-209ENST00000492270 SP8Q8IXZ3 490 aa31.55■■■□□ 2.64
UPF3A-209ENST00000492270 DNAAF4Q8WXU2 420 aa31.55■■■□□ 2.64
UPF3A-209ENST00000492270 POTECB2RU33 542 aa31.54■■■□□ 2.64
UPF3A-209ENST00000492270 E9PSI1 815 aa31.54■■■□□ 2.64
UPF3A-209ENST00000492270 C16orf71Q8IYS4 520 aaPredicted RBP31.54■■■□□ 2.64
UPF3A-209ENST00000492270 CDCA7LQ96GN5 454 aa31.54■■■□□ 2.64
UPF3A-209ENST00000492270 TMX4Q9H1E5 349 aaPredicted RBP31.54■■■□□ 2.64
UPF3A-209ENST00000492270 LTBP1Q14766 1721 aa31.54■■■□□ 2.64
UPF3A-209ENST00000492270 CDHR2Q9BYE9 1310 aa31.53■■■□□ 2.64
UPF3A-209ENST00000492270 SLFN5Q08AF3 891 aa31.53■■■□□ 2.64
UPF3A-209ENST00000492270 SCN4AP35499 1836 aa31.52■■■□□ 2.64
UPF3A-209ENST00000492270 PDE8AO60658 829 aa31.52■■■□□ 2.64
UPF3A-209ENST00000492270 CCDC85AQ96PX6 553 aaPredicted RBP31.52■■■□□ 2.64
UPF3A-209ENST00000492270 SEC31BQ9NQW1 1179 aa31.52■■■□□ 2.64
UPF3A-209ENST00000492270 F6X3S4 739 aa31.51■■■□□ 2.63
UPF3A-209ENST00000492270 VEGFAP15692 232 aaPredicted RBP31.51■■■□□ 2.63
UPF3A-209ENST00000492270 FZD9O00144 591 aa31.5■■■□□ 2.63
UPF3A-209ENST00000492270 HSP90B1P14625 803 aaKnown RBP31.5■■■□□ 2.63
UPF3A-209ENST00000492270 DPP8Q6V1X1 898 aaPredicted RBP31.5■■■□□ 2.63
UPF3A-209ENST00000492270 UBE3BQ7Z3V4 1068 aa31.49■■■□□ 2.63
UPF3A-209ENST00000492270 LARGE2Q8N3Y3 721 aa31.49■■■□□ 2.63
UPF3A-209ENST00000492270 MPNDQ8N594 471 aa31.49■■■□□ 2.63
UPF3A-209ENST00000492270 RBM46Q8TBY0 533 aaKnown RBP31.49■■■□□ 2.63
UPF3A-209ENST00000492270 JDP2Q8WYK2 163 aa31.49■■■□□ 2.63
UPF3A-209ENST00000492270 GCKRQ14397 625 aa31.48■■■□□ 2.63
UPF3A-209ENST00000492270 AOC3Q16853 763 aa31.48■■■□□ 2.63
UPF3A-209ENST00000492270 TMC4Q7Z404 712 aa31.48■■■□□ 2.63
UPF3A-209ENST00000492270 LINS1Q8NG48 757 aa31.48■■■□□ 2.63
UPF3A-209ENST00000492270 RTFDC1Q9BY42 306 aaPredicted RBP31.48■■■□□ 2.63
UPF3A-209ENST00000492270 PPIP5K2O43314 1243 aa31.47■■■□□ 2.63
UPF3A-209ENST00000492270 CCDC152Q4G0S7 254 aa31.47■■■□□ 2.63
UPF3A-209ENST00000492270 H7C1W4 665 aa31.46■■■□□ 2.63
UPF3A-209ENST00000492270 HSPA6P17066 643 aa31.45■■■□□ 2.63
UPF3A-209ENST00000492270 CTSWP56202 376 aa31.45■■■□□ 2.63
UPF3A-209ENST00000492270 RPS8P62241 208 aaKnown RBP31.45■■■□□ 2.63
UPF3A-209ENST00000492270 SUPT20HQ8NEM7 779 aa31.44■■■□□ 2.62
UPF3A-209ENST00000492270 CASP7P55210 303 aa31.43■■■□□ 2.62
UPF3A-209ENST00000492270 BEND3Q5T5X7 828 aa31.43■■■□□ 2.62
UPF3A-209ENST00000492270 NIM1KQ8IY84 436 aa31.43■■■□□ 2.62
UPF3A-209ENST00000492270 TRMT2AQ8IZ69 625 aaKnown RBP31.43■■■□□ 2.62
UPF3A-209ENST00000492270 L3MBTL3Q96JM7 780 aaPredicted RBP31.43■■■□□ 2.62
UPF3A-209ENST00000492270 GPSM2P81274 684 aa31.42■■■□□ 2.62
UPF3A-209ENST00000492270 MRPL50Q8N5N7 158 aaKnown RBP31.42■■■□□ 2.62
UPF3A-209ENST00000492270 TTLL11Q8NHH1 800 aa31.42■■■□□ 2.62
UPF3A-209ENST00000492270 NSFL1CQ9UNZ2 370 aaKnown RBP31.42■■■□□ 2.62
UPF3A-209ENST00000492270 CEP350Q5VT06 3117 aa31.41■■■□□ 2.62
UPF3A-209ENST00000492270 EIF6P56537 245 aaKnown RBP31.4■■■□□ 2.62
UPF3A-209ENST00000492270 KIAA2012Q0VF49 1180 aa31.4■■■□□ 2.62
UPF3A-209ENST00000492270 SSH1Q8WYL5 1049 aa31.4■■■□□ 2.62
UPF3A-209ENST00000492270 VPS33BQ9H267 617 aa31.4■■■□□ 2.62
UPF3A-209ENST00000492270 GREM2Q9H772 168 aa31.4■■■□□ 2.62
UPF3A-209ENST00000492270 GPC2Q8N158 579 aa31.39■■■□□ 2.62
UPF3A-209ENST00000492270 BCL2L13Q9BXK5 485 aa31.39■■■□□ 2.62
UPF3A-209ENST00000492270 GJA3Q9Y6H8 435 aa31.39■■■□□ 2.62
UPF3A-209ENST00000492270 POTEIP0CG38 1075 aa31.38■■■□□ 2.61
UPF3A-209ENST00000492270 POTEJP0CG39 1038 aa31.38■■■□□ 2.61
UPF3A-209ENST00000492270 FSTL1Q12841 308 aa31.38■■■□□ 2.61
UPF3A-209ENST00000492270 SMC1BQ8NDV3 1235 aa31.38■■■□□ 2.61
UPF3A-209ENST00000492270 POLLQ9UGP5 575 aa31.38■■■□□ 2.61
UPF3A-209ENST00000492270 SLC4A10Q6U841 1118 aa31.37■■■□□ 2.61
UPF3A-209ENST00000492270 ANKRD18AQ8IVF6 992 aa31.37■■■□□ 2.61
UPF3A-209ENST00000492270 PLA2G12BQ9BX93 195 aa31.37■■■□□ 2.61
UPF3A-209ENST00000492270 RTL9Q8NET4 1388 aa31.37■■■□□ 2.61
UPF3A-209ENST00000492270 ADAMTSL1Q8N6G6 1762 aa31.36■■■□□ 2.61
UPF3A-209ENST00000492270 IQCA1LA6NCM1 817 aa31.36■■■□□ 2.61
UPF3A-209ENST00000492270 GPR101Q96P66 508 aaPredicted RBP31.36■■■□□ 2.61
UPF3A-209ENST00000492270 TAF1DQ9H5J8 278 aaPredicted RBP31.35■■■□□ 2.61
UPF3A-209ENST00000492270 ZNRF3Q9ULT6 936 aa31.35■■■□□ 2.61
UPF3A-209ENST00000492270 C6orf229H3BNL8 230 aa31.34■■■□□ 2.61
UPF3A-209ENST00000492270 CDC5LQ99459 802 aaKnown RBP31.34■■■□□ 2.61
UPF3A-209ENST00000492270 HACL1Q9UJ83 578 aa31.34■■■□□ 2.61
UPF3A-209ENST00000492270 A0A1B0GUL6 1792 aa31.34■■■□□ 2.61
UPF3A-209ENST00000492270 RIMBP2O15034 1052 aa31.33■■■□□ 2.61
UPF3A-209ENST00000492270 FAM161AQ3B820 660 aa31.33■■■□□ 2.61
UPF3A-209ENST00000492270 TBC1D16Q8TBP0 767 aa31.33■■■□□ 2.61
UPF3A-209ENST00000492270 SCN9AQ15858 1988 aa31.32■■■□□ 2.6
UPF3A-209ENST00000492270 CXCL9Q07325 125 aa31.32■■■□□ 2.6
UPF3A-209ENST00000492270 WASHC4Q2M389 1173 aa31.32■■■□□ 2.6
UPF3A-209ENST00000492270 PODXL2Q9NZ53 605 aa31.32■■■□□ 2.6
UPF3A-209ENST00000492270 YDJCA8MPS7 323 aa31.31■■■□□ 2.6
UPF3A-209ENST00000492270 SRCIN1Q9C0H9 1055 aa31.31■■■□□ 2.6
UPF3A-209ENST00000492270 ANKIB1Q9P2G1 1089 aa31.31■■■□□ 2.6
UPF3A-209ENST00000492270 PTPRCP08575 1304 aa31.3■■■□□ 2.6
UPF3A-209ENST00000492270 GRM8O00222 908 aa31.3■■■□□ 2.6
UPF3A-209ENST00000492270 ALDH1L1O75891 902 aa31.3■■■□□ 2.6
UPF3A-209ENST00000492270 UFL1O94874 794 aa31.3■■■□□ 2.6
UPF3A-209ENST00000492270 CSF1RP07333 972 aa31.3■■■□□ 2.6
UPF3A-209ENST00000492270 EPHX2P34913 555 aa31.3■■■□□ 2.6
UPF3A-209ENST00000492270 SCNN1DP51172 638 aa31.3■■■□□ 2.6
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms