RNA–Protein interactions for RNA: ENST00000491319.2

SMPD4-220, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 593 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-220ENST00000491319 RTFDC1Q9BY42 306 aaPredicted RBP20.39■□□□□ 0.85
SMPD4-220ENST00000491319 CNTNAP1P78357 1384 aa20.38■□□□□ 0.85
SMPD4-220ENST00000491319 MYH3P11055 1940 aa20.38■□□□□ 0.85
SMPD4-220ENST00000491319 ELL2O00472 640 aaPredicted RBP20.38■□□□□ 0.85
SMPD4-220ENST00000491319 LMOD1P29536 600 aaPredicted RBP20.38■□□□□ 0.85
SMPD4-220ENST00000491319 CCDC184Q52MB2 194 aa20.38■□□□□ 0.85
SMPD4-220ENST00000491319 COL13A1Q5TAT6 717 aaPredicted RBP20.38■□□□□ 0.85
SMPD4-220ENST00000491319 DPP8Q6V1X1 898 aaPredicted RBP20.38■□□□□ 0.85
SMPD4-220ENST00000491319 EPS15P42566 896 aa20.37■□□□□ 0.85
SMPD4-220ENST00000491319 CALD1Q05682 793 aaKnown RBP20.37■□□□□ 0.85
SMPD4-220ENST00000491319 RTL5Q5HYW3 569 aaPredicted RBP20.37■□□□□ 0.85
SMPD4-220ENST00000491319 MPNDQ8N594 471 aa20.37■□□□□ 0.85
SMPD4-220ENST00000491319 SUPT20HQ8NEM7 779 aa20.37■□□□□ 0.85
SMPD4-220ENST00000491319 PHAXQ9H814 394 aaKnown RBP20.37■□□□□ 0.85
SMPD4-220ENST00000491319 CNTROBQ8N137 903 aa20.36■□□□□ 0.85
SMPD4-220ENST00000491319 VPS33BQ9H267 617 aa20.36■□□□□ 0.85
SMPD4-220ENST00000491319 SPEF2Q9C093 1822 aa20.36■□□□□ 0.85
SMPD4-220ENST00000491319 TMEM88BA6NKF7 163 aa20.35■□□□□ 0.85
SMPD4-220ENST00000491319 KIAA2012Q0VF49 1180 aa20.35■□□□□ 0.85
SMPD4-220ENST00000491319 C8orf58Q8NAV2 365 aa20.35■□□□□ 0.85
SMPD4-220ENST00000491319 CXCL9Q07325 125 aa20.34■□□□□ 0.85
SMPD4-220ENST00000491319 GOLGA2Q08379 1002 aa20.34■□□□□ 0.85
SMPD4-220ENST00000491319 RIC3Q7Z5B4 369 aa20.34■□□□□ 0.85
SMPD4-220ENST00000491319 CELF1Q92879 486 aaKnown RBP20.34■□□□□ 0.85
SMPD4-220ENST00000491319 ZNRF3Q9ULT6 936 aa20.34■□□□□ 0.85
SMPD4-220ENST00000491319 IRS4O14654 1257 aaPredicted RBP20.33■□□□□ 0.85
SMPD4-220ENST00000491319 TRIM28Q13263 835 aaKnown RBP20.33■□□□□ 0.85
SMPD4-220ENST00000491319 SF3B3Q15393 1217 aaKnown RBP20.33■□□□□ 0.85
SMPD4-220ENST00000491319 TMC4Q7Z404 712 aa20.33■□□□□ 0.85
SMPD4-220ENST00000491319 SCN9AQ15858 1988 aa20.32■□□□□ 0.84
SMPD4-220ENST00000491319 MYD88Q99836 296 aa20.32■□□□□ 0.84
SMPD4-220ENST00000491319 GPRC5DQ9NZD1 345 aa20.32■□□□□ 0.84
SMPD4-220ENST00000491319 CACNA1FO60840 1977 aa20.32■□□□□ 0.84
SMPD4-220ENST00000491319 USP50Q70EL3 339 aaPredicted RBP20.31■□□□□ 0.84
SMPD4-220ENST00000491319 TSPYL6Q8N831 410 aa20.31■□□□□ 0.84
SMPD4-220ENST00000491319 YDJCA8MPS7 323 aa20.3■□□□□ 0.84
SMPD4-220ENST00000491319 RAD17O75943 681 aa20.3■□□□□ 0.84
SMPD4-220ENST00000491319 VEGFBP49765 207 aa20.3■□□□□ 0.84
SMPD4-220ENST00000491319 GMPSP49915 693 aaPredicted RBP20.3■□□□□ 0.84
SMPD4-220ENST00000491319 FMR1Q06787 632 aaKnown RBP eCLIP20.3■□□□□ 0.84
SMPD4-220ENST00000491319 CIAPIN1Q6FI81 312 aa20.3■□□□□ 0.84
SMPD4-220ENST00000491319 ZBTB38Q8NAP3 1195 aaPredicted RBP20.3■□□□□ 0.84
SMPD4-220ENST00000491319 TSR2Q969E8 191 aaKnown RBP20.3■□□□□ 0.84
SMPD4-220ENST00000491319 POLR2AP24928 1970 aaKnown RBP20.3■□□□□ 0.84
SMPD4-220ENST00000491319 PSME4Q14997 1843 aa20.3■□□□□ 0.84
SMPD4-220ENST00000491319 THSD7BQ9C0I4 1608 aa20.29■□□□□ 0.84
SMPD4-220ENST00000491319 ADARB2Q9NS39 739 aaKnown RBP20.29■□□□□ 0.84
SMPD4-220ENST00000491319 NSFL1CQ9UNZ2 370 aaKnown RBP20.29■□□□□ 0.84
SMPD4-220ENST00000491319 CCDC30Q5VVM6 783 aa20.28■□□□□ 0.84
SMPD4-220ENST00000491319 RASSF10A6NK89 507 aa20.27■□□□□ 0.84
SMPD4-220ENST00000491319 GPSM2P81274 684 aa20.27■□□□□ 0.84
SMPD4-220ENST00000491319 CCDC191Q8NCU4 936 aa20.27■□□□□ 0.84
SMPD4-220ENST00000491319 JARID2Q92833 1246 aaPredicted RBP20.27■□□□□ 0.84
SMPD4-220ENST00000491319 BCL2L13Q9BXK5 485 aa20.27■□□□□ 0.84
SMPD4-220ENST00000491319 CDHR2Q9BYE9 1310 aa20.27■□□□□ 0.83
SMPD4-220ENST00000491319 TRAF5O00463 557 aa20.26■□□□□ 0.83
SMPD4-220ENST00000491319 DDX58O95786 925 aaKnown RBP20.26■□□□□ 0.83
SMPD4-220ENST00000491319 WASHC4Q2M389 1173 aa20.26■□□□□ 0.83
SMPD4-220ENST00000491319 WWC1Q8IX03 1113 aa20.26■□□□□ 0.83
SMPD4-220ENST00000491319 TNS4Q8IZW8 715 aa20.26■□□□□ 0.83
SMPD4-220ENST00000491319 METTL22Q9BUU2 404 aaPredicted RBP20.26■□□□□ 0.83
SMPD4-220ENST00000491319 DBNDD1Q9H9R9 158 aa20.26■□□□□ 0.83
SMPD4-220ENST00000491319 SEC31BQ9NQW1 1179 aa20.26■□□□□ 0.83
SMPD4-220ENST00000491319 POLLQ9UGP5 575 aa20.26■□□□□ 0.83
SMPD4-220ENST00000491319 ABT1Q9ULW3 272 aaKnown RBP20.26■□□□□ 0.83
SMPD4-220ENST00000491319 SHTN1A0MZ66 631 aa20.25■□□□□ 0.83
SMPD4-220ENST00000491319 C6orf229H3BNL8 230 aa20.25■□□□□ 0.83
SMPD4-220ENST00000491319 RIMBP2O15034 1052 aa20.25■□□□□ 0.83
SMPD4-220ENST00000491319 PCCAP05165 728 aaPredicted RBP20.25■□□□□ 0.83
SMPD4-220ENST00000491319 RPS8P62241 208 aaKnown RBP20.25■□□□□ 0.83
SMPD4-220ENST00000491319 TNIP1Q15025 636 aa20.25■□□□□ 0.83
SMPD4-220ENST00000491319 CCDC27Q2M243 656 aa20.25■□□□□ 0.83
SMPD4-220ENST00000491319 GPR101Q96P66 508 aaPredicted RBP20.25■□□□□ 0.83
SMPD4-220ENST00000491319 CWC25Q9NXE8 425 aaPredicted RBP20.25■□□□□ 0.83
SMPD4-220ENST00000491319 MAP3K2Q9Y2U5 619 aa20.25■□□□□ 0.83
SMPD4-220ENST00000491319 FOXN1O15353 648 aa20.24■□□□□ 0.83
SMPD4-220ENST00000491319 DEFB115Q30KQ5 88 aa20.24■□□□□ 0.83
SMPD4-220ENST00000491319 TRPM4Q8TD43 1214 aa20.24■□□□□ 0.83
SMPD4-220ENST00000491319 PDE8AO60658 829 aa20.23■□□□□ 0.83
SMPD4-220ENST00000491319 CCDC85AQ96PX6 553 aaPredicted RBP20.23■□□□□ 0.83
SMPD4-220ENST00000491319 CHMP4AQ9BY43 222 aa20.23■□□□□ 0.83
SMPD4-220ENST00000491319 MRS2Q9HD23 443 aa20.23■□□□□ 0.83
SMPD4-220ENST00000491319 ZBTB12Q9Y330 459 aaPredicted RBP20.23■□□□□ 0.83
SMPD4-220ENST00000491319 PSMD14O00487 310 aa20.22■□□□□ 0.83
SMPD4-220ENST00000491319 ECE2O60344 883 aa20.22■□□□□ 0.83
SMPD4-220ENST00000491319 HSP90B1P14625 803 aaKnown RBP20.22■□□□□ 0.83
SMPD4-220ENST00000491319 HIRAP54198 1017 aaPredicted RBP20.22■□□□□ 0.83
SMPD4-220ENST00000491319 TWISTNBQ3B726 338 aaPredicted RBP20.22■□□□□ 0.83
SMPD4-220ENST00000491319 CCDC152Q4G0S7 254 aa20.22■□□□□ 0.83
SMPD4-220ENST00000491319 CST9Q5W186 159 aa20.22■□□□□ 0.83
SMPD4-220ENST00000491319 TBC1D16Q8TBP0 767 aa20.22■□□□□ 0.83
SMPD4-220ENST00000491319 STK31Q9BXU1 1019 aa20.22■□□□□ 0.83
SMPD4-220ENST00000491319 CNOT7Q9UIV1 285 aaKnown RBP20.22■□□□□ 0.83
SMPD4-220ENST00000491319 RTL9Q8NET4 1388 aa20.21■□□□□ 0.83
SMPD4-220ENST00000491319 PI4KAP2A4QPH2 592 aa20.21■□□□□ 0.83
SMPD4-220ENST00000491319 IGKV5-2P06315 115 aa20.21■□□□□ 0.83
SMPD4-220ENST00000491319 DOK7Q18PE1 504 aa20.21■□□□□ 0.83
SMPD4-220ENST00000491319 KSR2Q6VAB6 950 aa20.21■□□□□ 0.83
SMPD4-220ENST00000491319 MICALL2Q8IY33 904 aa20.21■□□□□ 0.83
SMPD4-220ENST00000491319 PI4KAP1Q8N8J0 262 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 122.7 ms