RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 ITGBL1O95965 494 aaPredicted RBP17.67■□□□□ 0.42
COL6A3-211ENST00000491233 HSPA1AP0DMV8 641 aaKnown RBP17.67■□□□□ 0.42
COL6A3-211ENST00000491233 HSPA1BP0DMV9 641 aaKnown RBP17.67■□□□□ 0.42
COL6A3-211ENST00000491233 GOLGA2Q08379 1002 aa17.67■□□□□ 0.42
COL6A3-211ENST00000491233 CCDC184Q52MB2 194 aa17.67■□□□□ 0.42
COL6A3-211ENST00000491233 MAP1SQ66K74 1059 aaPredicted RBP17.67■□□□□ 0.42
COL6A3-211ENST00000491233 MPNDQ8N594 471 aa17.67■□□□□ 0.42
COL6A3-211ENST00000491233 CNTNAP1P78357 1384 aa17.66■□□□□ 0.42
COL6A3-211ENST00000491233 RTL5Q5HYW3 569 aaPredicted RBP17.66■□□□□ 0.42
COL6A3-211ENST00000491233 RIC3Q7Z5B4 369 aa17.66■□□□□ 0.42
COL6A3-211ENST00000491233 VPS33BQ9H267 617 aa17.66■□□□□ 0.42
COL6A3-211ENST00000491233 PHAXQ9H814 394 aaKnown RBP17.66■□□□□ 0.42
COL6A3-211ENST00000491233 TRPM7Q96QT4 1865 aa17.65■□□□□ 0.42
COL6A3-211ENST00000491233 EPS15P42566 896 aa17.65■□□□□ 0.42
COL6A3-211ENST00000491233 TMC4Q7Z404 712 aa17.65■□□□□ 0.42
COL6A3-211ENST00000491233 C8orf58Q8NAV2 365 aa17.65■□□□□ 0.42
COL6A3-211ENST00000491233 ZNRF3Q9ULT6 936 aa17.65■□□□□ 0.42
COL6A3-211ENST00000491233 TMEM88BA6NKF7 163 aa17.64■□□□□ 0.41
COL6A3-211ENST00000491233 KIAA2012Q0VF49 1180 aa17.64■□□□□ 0.41
COL6A3-211ENST00000491233 TRIM28Q13263 835 aaKnown RBP17.64■□□□□ 0.41
COL6A3-211ENST00000491233 SF3B3Q15393 1217 aaKnown RBP17.64■□□□□ 0.41
COL6A3-211ENST00000491233 CNTROBQ8N137 903 aa17.64■□□□□ 0.41
COL6A3-211ENST00000491233 CELF1Q92879 486 aaKnown RBP17.64■□□□□ 0.41
COL6A3-211ENST00000491233 IRS4O14654 1257 aaPredicted RBP17.63■□□□□ 0.41
COL6A3-211ENST00000491233 CXCL9Q07325 125 aa17.63■□□□□ 0.41
COL6A3-211ENST00000491233 COL13A1Q5TAT6 717 aaPredicted RBP17.63■□□□□ 0.41
COL6A3-211ENST00000491233 MYD88Q99836 296 aa17.63■□□□□ 0.41
COL6A3-211ENST00000491233 GPRC5DQ9NZD1 345 aa17.62■□□□□ 0.41
COL6A3-211ENST00000491233 MYH3P11055 1940 aa17.62■□□□□ 0.41
COL6A3-211ENST00000491233 SPEF2Q9C093 1822 aa17.61■□□□□ 0.41
COL6A3-211ENST00000491233 CCDC30Q5VVM6 783 aa17.61■□□□□ 0.41
COL6A3-211ENST00000491233 CIAPIN1Q6FI81 312 aa17.61■□□□□ 0.41
COL6A3-211ENST00000491233 USP50Q70EL3 339 aaPredicted RBP17.61■□□□□ 0.41
COL6A3-211ENST00000491233 TSPYL6Q8N831 410 aa17.61■□□□□ 0.41
COL6A3-211ENST00000491233 TSR2Q969E8 191 aaKnown RBP17.61■□□□□ 0.41
COL6A3-211ENST00000491233 RAD17O75943 681 aa17.6■□□□□ 0.41
COL6A3-211ENST00000491233 GMPSP49915 693 aaPredicted RBP17.6■□□□□ 0.41
COL6A3-211ENST00000491233 ZBTB38Q8NAP3 1195 aaPredicted RBP17.6■□□□□ 0.41
COL6A3-211ENST00000491233 ADARB2Q9NS39 739 aaKnown RBP17.6■□□□□ 0.41
COL6A3-211ENST00000491233 NSFL1CQ9UNZ2 370 aaKnown RBP17.6■□□□□ 0.41
COL6A3-211ENST00000491233 CDHR2Q9BYE9 1310 aa17.59■□□□□ 0.41
COL6A3-211ENST00000491233 YDJCA8MPS7 323 aa17.59■□□□□ 0.41
COL6A3-211ENST00000491233 DDX58O95786 925 aaKnown RBP17.59■□□□□ 0.41
COL6A3-211ENST00000491233 CCDC27Q2M243 656 aa17.59■□□□□ 0.41
COL6A3-211ENST00000491233 THSD7BQ9C0I4 1608 aa17.58■□□□□ 0.41
COL6A3-211ENST00000491233 ZEB1P37275 1124 aaPredicted RBP17.58■□□□□ 0.4
COL6A3-211ENST00000491233 VEGFBP49765 207 aa17.58■□□□□ 0.4
COL6A3-211ENST00000491233 GPSM2P81274 684 aa17.58■□□□□ 0.4
COL6A3-211ENST00000491233 FMR1Q06787 632 aaKnown RBP eCLIP17.58■□□□□ 0.4
COL6A3-211ENST00000491233 WWC1Q8IX03 1113 aa17.58■□□□□ 0.4
COL6A3-211ENST00000491233 CCDC191Q8NCU4 936 aa17.58■□□□□ 0.4
COL6A3-211ENST00000491233 METTL22Q9BUU2 404 aaPredicted RBP17.58■□□□□ 0.4
COL6A3-211ENST00000491233 BCL2L13Q9BXK5 485 aa17.58■□□□□ 0.4
COL6A3-211ENST00000491233 CHMP4AQ9BY43 222 aa17.58■□□□□ 0.4
COL6A3-211ENST00000491233 MRS2Q9HD23 443 aa17.58■□□□□ 0.4
COL6A3-211ENST00000491233 CWC25Q9NXE8 425 aaPredicted RBP17.58■□□□□ 0.4
COL6A3-211ENST00000491233 SCN9AQ15858 1988 aa17.57■□□□□ 0.4
COL6A3-211ENST00000491233 C6orf229H3BNL8 230 aa17.57■□□□□ 0.4
COL6A3-211ENST00000491233 PCCAP05165 728 aaPredicted RBP17.57■□□□□ 0.4
COL6A3-211ENST00000491233 HSP90B1P14625 803 aaKnown RBP17.57■□□□□ 0.4
COL6A3-211ENST00000491233 TNIP1Q15025 636 aa17.57■□□□□ 0.4
COL6A3-211ENST00000491233 WASHC4Q2M389 1173 aa17.57■□□□□ 0.4
COL6A3-211ENST00000491233 JARID2Q92833 1246 aaPredicted RBP17.57■□□□□ 0.4
COL6A3-211ENST00000491233 SEC31BQ9NQW1 1179 aa17.57■□□□□ 0.4
COL6A3-211ENST00000491233 ABT1Q9ULW3 272 aaKnown RBP17.57■□□□□ 0.4
COL6A3-211ENST00000491233 MAP3K2Q9Y2U5 619 aa17.57■□□□□ 0.4
COL6A3-211ENST00000491233 PSME4Q14997 1843 aa17.56■□□□□ 0.4
COL6A3-211ENST00000491233 RASSF10A6NK89 507 aa17.56■□□□□ 0.4
COL6A3-211ENST00000491233 TRAF5O00463 557 aa17.56■□□□□ 0.4
COL6A3-211ENST00000491233 RIMBP2O15034 1052 aa17.56■□□□□ 0.4
COL6A3-211ENST00000491233 RPS8P62241 208 aaKnown RBP17.56■□□□□ 0.4
COL6A3-211ENST00000491233 GPR101Q96P66 508 aaPredicted RBP17.56■□□□□ 0.4
COL6A3-211ENST00000491233 STK31Q9BXU1 1019 aa17.56■□□□□ 0.4
COL6A3-211ENST00000491233 DBNDD1Q9H9R9 158 aa17.56■□□□□ 0.4
COL6A3-211ENST00000491233 POLLQ9UGP5 575 aa17.56■□□□□ 0.4
COL6A3-211ENST00000491233 CACNA1FO60840 1977 aa17.56■□□□□ 0.4
COL6A3-211ENST00000491233 PDE8AO60658 829 aa17.55■□□□□ 0.4
COL6A3-211ENST00000491233 TWISTNBQ3B726 338 aaPredicted RBP17.55■□□□□ 0.4
COL6A3-211ENST00000491233 CCDC152Q4G0S7 254 aa17.55■□□□□ 0.4
COL6A3-211ENST00000491233 TNS4Q8IZW8 715 aa17.55■□□□□ 0.4
COL6A3-211ENST00000491233 CCDC85AQ96PX6 553 aaPredicted RBP17.55■□□□□ 0.4
COL6A3-211ENST00000491233 EYA3Q99504 573 aa17.55■□□□□ 0.4
COL6A3-211ENST00000491233 IL16Q14005 1332 aa17.54■□□□□ 0.4
COL6A3-211ENST00000491233 SHTN1A0MZ66 631 aa17.54■□□□□ 0.4
COL6A3-211ENST00000491233 PI4KAP2A4QPH2 592 aa17.54■□□□□ 0.4
COL6A3-211ENST00000491233 ANP32CO43423 234 aa17.54■□□□□ 0.4
COL6A3-211ENST00000491233 DEFB115Q30KQ5 88 aa17.54■□□□□ 0.4
COL6A3-211ENST00000491233 KSR2Q6VAB6 950 aa17.54■□□□□ 0.4
COL6A3-211ENST00000491233 PI4KAP1Q8N8J0 262 aa17.54■□□□□ 0.4
COL6A3-211ENST00000491233 TBC1D16Q8TBP0 767 aa17.54■□□□□ 0.4
COL6A3-211ENST00000491233 TRPM4Q8TD43 1214 aa17.54■□□□□ 0.4
COL6A3-211ENST00000491233 PCNTO95613 3336 aa17.54■□□□□ 0.4
COL6A3-211ENST00000491233 PSMD14O00487 310 aa17.53■□□□□ 0.4
COL6A3-211ENST00000491233 FOXN1O15353 648 aa17.53■□□□□ 0.4
COL6A3-211ENST00000491233 ECE2O60344 883 aa17.53■□□□□ 0.4
COL6A3-211ENST00000491233 IGKV5-2P06315 115 aa17.53■□□□□ 0.4
COL6A3-211ENST00000491233 MICALL2Q8IY33 904 aa17.53■□□□□ 0.4
COL6A3-211ENST00000491233 CNOT7Q9UIV1 285 aaKnown RBP17.53■□□□□ 0.4
COL6A3-211ENST00000491233 ZBTB12Q9Y330 459 aaPredicted RBP17.53■□□□□ 0.4
COL6A3-211ENST00000491233 RTL9Q8NET4 1388 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms