RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 SLC4A10Q6U841 1118 aa20.77■□□□□ 0.92
SF3A1-204ENST00000447376 F6X3S4 739 aa20.76■□□□□ 0.91
SF3A1-204ENST00000447376 DPY19L2Q6NUT2 758 aa20.76■□□□□ 0.91
SF3A1-204ENST00000447376 UBE3BQ7Z3V4 1068 aa20.76■□□□□ 0.91
SF3A1-204ENST00000447376 MRPL50Q8N5N7 158 aaKnown RBP20.76■□□□□ 0.91
SF3A1-204ENST00000447376 PSMD1Q99460 953 aa20.76■□□□□ 0.91
SF3A1-204ENST00000447376 ATP6V0A2Q9Y487 856 aa20.76■□□□□ 0.91
SF3A1-204ENST00000447376 SUPT20HQ8NEM7 779 aa20.75■□□□□ 0.91
SF3A1-204ENST00000447376 SSH1Q8WYL5 1049 aa20.75■□□□□ 0.91
SF3A1-204ENST00000447376 OLFM4Q6UX06 510 aa20.74■□□□□ 0.91
SF3A1-204ENST00000447376 SP8Q8IXZ3 490 aa20.74■□□□□ 0.91
SF3A1-204ENST00000447376 JARID2Q92833 1246 aaPredicted RBP20.74■□□□□ 0.91
SF3A1-204ENST00000447376 BCL2L13Q9BXK5 485 aa20.74■□□□□ 0.91
SF3A1-204ENST00000447376 SRCIN1Q9C0H9 1055 aa20.74■□□□□ 0.91
SF3A1-204ENST00000447376 TIAM2Q8IVF5 1701 aa20.73■□□□□ 0.91
SF3A1-204ENST00000447376 ALDH1L1O75891 902 aa20.73■□□□□ 0.91
SF3A1-204ENST00000447376 BEND3Q5T5X7 828 aa20.73■□□□□ 0.91
SF3A1-204ENST00000447376 DPP8Q6V1X1 898 aaPredicted RBP20.73■□□□□ 0.91
SF3A1-204ENST00000447376 JDP2Q8WYK2 163 aa20.73■□□□□ 0.91
SF3A1-204ENST00000447376 C9orf78Q9NZ63 289 aaPredicted RBP20.73■□□□□ 0.91
SF3A1-204ENST00000447376 CCDC88AQ3V6T2 1871 aa20.73■□□□□ 0.91
SF3A1-204ENST00000447376 H7C1W4 665 aa20.72■□□□□ 0.91
SF3A1-204ENST00000447376 IARSP41252 1262 aaKnown RBP20.72■□□□□ 0.91
SF3A1-204ENST00000447376 CTSWP56202 376 aa20.72■□□□□ 0.91
SF3A1-204ENST00000447376 MPNDQ8N594 471 aa20.72■□□□□ 0.91
SF3A1-204ENST00000447376 CDC5LQ99459 802 aaKnown RBP20.72■□□□□ 0.91
SF3A1-204ENST00000447376 ZNF277Q9NRM2 450 aaPredicted RBP20.72■□□□□ 0.91
SF3A1-204ENST00000447376 RPS8P62241 208 aaKnown RBP20.71■□□□□ 0.91
SF3A1-204ENST00000447376 ANKRD18AQ8IVF6 992 aa20.7■□□□□ 0.9
SF3A1-204ENST00000447376 C16orf71Q8IYS4 520 aaPredicted RBP20.7■□□□□ 0.9
SF3A1-204ENST00000447376 CCDC85AQ96PX6 553 aaPredicted RBP20.7■□□□□ 0.9
SF3A1-204ENST00000447376 VPS33BQ9H267 617 aa20.7■□□□□ 0.9
SF3A1-204ENST00000447376 DICER1Q9UPY3 1922 aaKnown RBP20.7■□□□□ 0.9
SF3A1-204ENST00000447376 GLTPD2A6NH11 291 aa20.69■□□□□ 0.9
SF3A1-204ENST00000447376 PRELPP51888 382 aa20.69■□□□□ 0.9
SF3A1-204ENST00000447376 LARGE2Q8N3Y3 721 aa20.69■□□□□ 0.9
SF3A1-204ENST00000447376 CELF1Q92879 486 aaKnown RBP20.69■□□□□ 0.9
SF3A1-204ENST00000447376 KIF16BQ96L93 1317 aa20.69■□□□□ 0.9
SF3A1-204ENST00000447376 MYH3P11055 1940 aa20.68■□□□□ 0.9
SF3A1-204ENST00000447376 GRM8O00222 908 aa20.68■□□□□ 0.9
SF3A1-204ENST00000447376 TTLL11Q8NHH1 800 aa20.68■□□□□ 0.9
SF3A1-204ENST00000447376 PLA2G12BQ9BX93 195 aa20.68■□□□□ 0.9
SF3A1-204ENST00000447376 API5Q9BZZ5 524 aaKnown RBP20.68■□□□□ 0.9
SF3A1-204ENST00000447376 PPIP5K2O43314 1243 aa20.67■□□□□ 0.9
SF3A1-204ENST00000447376 SEC31BQ9NQW1 1179 aa20.67■□□□□ 0.9
SF3A1-204ENST00000447376 NSFL1CQ9UNZ2 370 aaKnown RBP20.67■□□□□ 0.9
SF3A1-204ENST00000447376 IGHMBP2P38935 993 aaKnown RBP20.66■□□□□ 0.9
SF3A1-204ENST00000447376 RARSP54136 660 aaKnown RBP20.66■□□□□ 0.9
SF3A1-204ENST00000447376 NIM1KQ8IY84 436 aa20.66■□□□□ 0.9
SF3A1-204ENST00000447376 ANKIB1Q9P2G1 1089 aa20.66■□□□□ 0.9
SF3A1-204ENST00000447376 CHMP3Q9Y3E7 222 aa20.66■□□□□ 0.9
SF3A1-204ENST00000447376 SNED1Q8TER0 1413 aa20.65■□□□□ 0.9
SF3A1-204ENST00000447376 RTL9Q8NET4 1388 aa20.65■□□□□ 0.9
SF3A1-204ENST00000447376 IPO8O15397 1037 aaKnown RBP20.65■□□□□ 0.9
SF3A1-204ENST00000447376 BRPF1P55201 1214 aaPredicted RBP20.65■□□□□ 0.9
SF3A1-204ENST00000447376 EIF6P56537 245 aaKnown RBP20.65■□□□□ 0.9
SF3A1-204ENST00000447376 YTHDC1Q96MU7 727 aaKnown RBP20.65■□□□□ 0.9
SF3A1-204ENST00000447376 EYA3Q99504 573 aa20.65■□□□□ 0.9
SF3A1-204ENST00000447376 C6orf229H3BNL8 230 aa20.64■□□□□ 0.89
SF3A1-204ENST00000447376 CCT4P50991 539 aaKnown RBP20.64■□□□□ 0.89
SF3A1-204ENST00000447376 RTFDC1Q9BY42 306 aaPredicted RBP20.64■□□□□ 0.89
SF3A1-204ENST00000447376 GREM2Q9H772 168 aa20.64■□□□□ 0.89
SF3A1-204ENST00000447376 NMRK2Q9NPI5 230 aa20.64■□□□□ 0.89
SF3A1-204ENST00000447376 NOB1Q9ULX3 412 aaKnown RBP20.64■□□□□ 0.89
SF3A1-204ENST00000447376 TAF1P21675 1872 aa20.64■□□□□ 0.89
SF3A1-204ENST00000447376 ANKRD18BA2A2Z9 1011 aa20.63■□□□□ 0.89
SF3A1-204ENST00000447376 VEGFAP15692 232 aaPredicted RBP20.63■□□□□ 0.89
SF3A1-204ENST00000447376 ITGA6P23229 1130 aa20.63■□□□□ 0.89
SF3A1-204ENST00000447376 CASP7P55210 303 aa20.63■□□□□ 0.89
SF3A1-204ENST00000447376 MPHOSPH8Q99549 860 aa20.63■□□□□ 0.89
SF3A1-204ENST00000447376 RRAGCQ9HB90 399 aa20.63■□□□□ 0.89
SF3A1-204ENST00000447376 LRRC37AA6NMS7 1700 aa20.63■□□□□ 0.89
SF3A1-204ENST00000447376 IFIT5Q13325 482 aaKnown RBP20.62■□□□□ 0.89
SF3A1-204ENST00000447376 AOC3Q16853 763 aa20.62■□□□□ 0.89
SF3A1-204ENST00000447376 TAF7LQ5H9L4 462 aa20.62■□□□□ 0.89
SF3A1-204ENST00000447376 HDAC5Q9UQL6 1122 aa20.62■□□□□ 0.89
SF3A1-204ENST00000447376 G3V3G9 751 aa20.61■□□□□ 0.89
SF3A1-204ENST00000447376 FZD9O00144 591 aa20.61■□□□□ 0.89
SF3A1-204ENST00000447376 CSF1RP07333 972 aa20.61■□□□□ 0.89
SF3A1-204ENST00000447376 C1QTNF8P60827 252 aa20.61■□□□□ 0.89
SF3A1-204ENST00000447376 KIAA2012Q0VF49 1180 aa20.61■□□□□ 0.89
SF3A1-204ENST00000447376 WASHC4Q2M389 1173 aa20.61■□□□□ 0.89
SF3A1-204ENST00000447376 CCDC57Q2TAC2 916 aa20.61■□□□□ 0.89
SF3A1-204ENST00000447376 FAM161AQ3B820 660 aa20.61■□□□□ 0.89
SF3A1-204ENST00000447376 DCAF8Q5TAQ9 597 aa20.61■□□□□ 0.89
SF3A1-204ENST00000447376 ARHGAP45Q92619 1136 aa20.61■□□□□ 0.89
SF3A1-204ENST00000447376 BSDC1Q9NW68 430 aaPredicted RBP20.61■□□□□ 0.89
SF3A1-204ENST00000447376 GGA1Q9UJY5 639 aa20.61■□□□□ 0.89
SF3A1-204ENST00000447376 XDHP47989 1333 aa20.6■□□□□ 0.89
SF3A1-204ENST00000447376 IQCA1LA6NCM1 817 aa20.6■□□□□ 0.89
SF3A1-204ENST00000447376 KIF3CO14782 793 aa20.6■□□□□ 0.89
SF3A1-204ENST00000447376 GPSM2P81274 684 aa20.6■□□□□ 0.89
SF3A1-204ENST00000447376 LMBR1LQ6UX01 489 aa20.6■□□□□ 0.89
SF3A1-204ENST00000447376 FRAT1Q92837 279 aaPredicted RBP20.6■□□□□ 0.89
SF3A1-204ENST00000447376 TOMM70O94826 608 aa20.59■□□□□ 0.89
SF3A1-204ENST00000447376 DDNO94850 711 aaPredicted RBP20.59■□□□□ 0.89
SF3A1-204ENST00000447376 UFL1O94874 794 aa20.59■□□□□ 0.89
SF3A1-204ENST00000447376 SLC51AQ86UW1 340 aa20.59■□□□□ 0.89
SF3A1-204ENST00000447376 GPC2Q8N158 579 aa20.59■□□□□ 0.89
SF3A1-204ENST00000447376 ZC3H12CQ9C0D7 883 aaKnown RBP20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms