RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 FAM89AQ96GI7 184 aa7.29□□□□□ -1.24
VPS50-205ENST00000441602 TBC1D2Q9BYX2 928 aa7.29□□□□□ -1.24
VPS50-205ENST00000441602 QTRT2Q9H974 415 aaKnown RBP7.29□□□□□ -1.24
VPS50-205ENST00000441602 RPS6KA4O75676 772 aa7.28□□□□□ -1.24
VPS50-205ENST00000441602 CSF1RP07333 972 aa7.28□□□□□ -1.24
VPS50-205ENST00000441602 ITPK1Q13572 414 aa7.28□□□□□ -1.24
VPS50-205ENST00000441602 HLFQ16534 295 aa7.28□□□□□ -1.24
VPS50-205ENST00000441602 NYXQ9GZU5 481 aa7.28□□□□□ -1.24
VPS50-205ENST00000441602 NIP7Q9Y221 180 aaKnown RBP eCLIP7.28□□□□□ -1.24
VPS50-205ENST00000441602 ZPR1O75312 459 aa7.28□□□□□ -1.24
VPS50-205ENST00000441602 CAMTA2O94983 1202 aa7.28□□□□□ -1.24
VPS50-205ENST00000441602 METTL24Q5JXM2 366 aa7.28□□□□□ -1.24
VPS50-205ENST00000441602 ZNF772Q68DY9 489 aaPredicted RBP7.28□□□□□ -1.24
VPS50-205ENST00000441602 FAM196AQ6ZSG2 479 aa7.28□□□□□ -1.24
VPS50-205ENST00000441602 KLHDC4Q8TBB5 520 aa7.28□□□□□ -1.24
VPS50-205ENST00000441602 RTCBQ9Y3I0 505 aaKnown RBP7.28□□□□□ -1.24
VPS50-205ENST00000441602 K7ELQ4 463 aaPredicted RBP7.28□□□□□ -1.24
VPS50-205ENST00000441602 SGSM2O43147 1006 aa7.28□□□□□ -1.24
VPS50-205ENST00000441602 KCNQ2O43526 872 aa7.28□□□□□ -1.24
VPS50-205ENST00000441602 MAP4K4O95819 1239 aaPredicted RBP7.28□□□□□ -1.24
VPS50-205ENST00000441602 IGHMBP2P38935 993 aaKnown RBP7.28□□□□□ -1.24
VPS50-205ENST00000441602 SLC4A3P48751 1232 aa7.28□□□□□ -1.24
VPS50-205ENST00000441602 TTC39AQ5SRH9 613 aa7.28□□□□□ -1.24
VPS50-205ENST00000441602 RNF20Q5VTR2 975 aa7.28□□□□□ -1.24
VPS50-205ENST00000441602 LDHAL6AQ6ZMR3 332 aa7.28□□□□□ -1.24
VPS50-205ENST00000441602 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.28□□□□□ -1.24
VPS50-205ENST00000441602 BOLA2Q9H3K6 86 aa7.28□□□□□ -1.24
VPS50-205ENST00000441602 CHMP5Q9NZZ3 219 aa7.28□□□□□ -1.24
VPS50-205ENST00000441602 CIZ1Q9ULV3 898 aaPredicted RBP7.28□□□□□ -1.24
VPS50-205ENST00000441602 THSD7AQ9UPZ6 1657 aa7.28□□□□□ -1.24
VPS50-205ENST00000441602 ZNF831Q5JPB2 1677 aa7.27□□□□□ -1.25
VPS50-205ENST00000441602 ONECUT3O60422 494 aaPredicted RBP7.27□□□□□ -1.25
VPS50-205ENST00000441602 CDC5LQ99459 802 aaKnown RBP7.27□□□□□ -1.25
VPS50-205ENST00000441602 ZKSCAN1P17029 563 aaPredicted RBP7.27□□□□□ -1.25
VPS50-205ENST00000441602 ITGA6P23229 1130 aa7.27□□□□□ -1.25
VPS50-205ENST00000441602 MPHOSPH8Q99549 860 aa7.27□□□□□ -1.25
VPS50-205ENST00000441602 BCL11BQ9C0K0 894 aaPredicted RBP7.27□□□□□ -1.25
VPS50-205ENST00000441602 NPHP1O15259 732 aa7.26□□□□□ -1.25
VPS50-205ENST00000441602 IFIT1P09914 478 aaKnown RBP7.26□□□□□ -1.25
VPS50-205ENST00000441602 ATP2B3Q16720 1220 aa7.26□□□□□ -1.25
VPS50-205ENST00000441602 TTLL11Q8NHH1 800 aa7.26□□□□□ -1.25
VPS50-205ENST00000441602 DBNDD2Q9BQY9 259 aa7.26□□□□□ -1.25
VPS50-205ENST00000441602 ABCC12Q96J65 1359 aa7.26□□□□□ -1.25
VPS50-205ENST00000441602 MROH5Q6ZUA9 1318 aa7.26□□□□□ -1.25
VPS50-205ENST00000441602 UQCRFS1P1P0C7P4 283 aa7.26□□□□□ -1.25
VPS50-205ENST00000441602 SLC5A1P13866 664 aa7.26□□□□□ -1.25
VPS50-205ENST00000441602 ADRA2BP18089 450 aa7.26□□□□□ -1.25
VPS50-205ENST00000441602 ZSCAN25Q6NSZ9 544 aa7.26□□□□□ -1.25
VPS50-205ENST00000441602 CWC27Q6UX04 472 aaKnown RBP7.26□□□□□ -1.25
VPS50-205ENST00000441602 DNAJC2Q99543 621 aaKnown RBP7.26□□□□□ -1.25
VPS50-205ENST00000441602 HAUS7Q99871 368 aa7.26□□□□□ -1.25
VPS50-205ENST00000441602 DBNLQ9UJU6 430 aaKnown RBP7.26□□□□□ -1.25
VPS50-205ENST00000441602 NHSQ6T4R5 1651 aa7.26□□□□□ -1.25
VPS50-205ENST00000441602 ZNF609O15014 1411 aa7.26□□□□□ -1.25
VPS50-205ENST00000441602 ANKRD36CQ5JPF3 1778 aa7.26□□□□□ -1.25
VPS50-205ENST00000441602 GNPATO15228 680 aa7.26□□□□□ -1.25
VPS50-205ENST00000441602 ATG9AQ7Z3C6 839 aa7.26□□□□□ -1.25
VPS50-205ENST00000441602 KRT27Q7Z3Y8 459 aa7.26□□□□□ -1.25
VPS50-205ENST00000441602 LINC00116Q8NCU8 138 aa7.26□□□□□ -1.25
VPS50-205ENST00000441602 NARFQ9UHQ1 456 aa7.26□□□□□ -1.25
VPS50-205ENST00000441602 RREB1Q92766 1687 aa7.26□□□□□ -1.25
VPS50-205ENST00000441602 A0A1B0GUL7 405 aa7.25□□□□□ -1.25
VPS50-205ENST00000441602 ZFYP08048 801 aaPredicted RBP7.25□□□□□ -1.25
VPS50-205ENST00000441602 SUSD4Q5VX71 490 aa7.25□□□□□ -1.25
VPS50-205ENST00000441602 ZNF594Q96JF6 807 aaPredicted RBP7.25□□□□□ -1.25
VPS50-205ENST00000441602 SETDB2Q96T68 719 aa7.25□□□□□ -1.25
VPS50-205ENST00000441602 RTL9Q8NET4 1388 aa7.25□□□□□ -1.25
VPS50-205ENST00000441602 FAM177BA6PVY3 158 aa7.25□□□□□ -1.25
VPS50-205ENST00000441602 PTMSP20962 102 aa7.25□□□□□ -1.25
VPS50-205ENST00000441602 PSMA5P28066 241 aa7.25□□□□□ -1.25
VPS50-205ENST00000441602 SLC27A3Q5K4L6 730 aa7.25□□□□□ -1.25
VPS50-205ENST00000441602 CCDC85AQ96PX6 553 aaPredicted RBP7.25□□□□□ -1.25
VPS50-205ENST00000441602 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.25□□□□□ -1.25
VPS50-205ENST00000441602 SLKQ9H2G2 1235 aaPredicted RBP7.25□□□□□ -1.25
VPS50-205ENST00000441602 RFC4P35249 363 aa7.25□□□□□ -1.25
VPS50-205ENST00000441602 RBM6P78332 1123 aaKnown RBP7.25□□□□□ -1.25
VPS50-205ENST00000441602 TTF1Q15361 905 aaPredicted RBP7.25□□□□□ -1.25
VPS50-205ENST00000441602 LRRC24Q50LG9 513 aa7.25□□□□□ -1.25
VPS50-205ENST00000441602 TRAPPC3LQ5T215 181 aa7.25□□□□□ -1.25
VPS50-205ENST00000441602 KBTBD3Q8NAB2 608 aa7.25□□□□□ -1.25
VPS50-205ENST00000441602 GREM2Q9H772 168 aa7.25□□□□□ -1.25
VPS50-205ENST00000441602 TLR7Q9NYK1 1049 aaKnown RBP7.25□□□□□ -1.25
VPS50-205ENST00000441602 NMIQ13287 307 aaPredicted RBP7.24□□□□□ -1.25
VPS50-205ENST00000441602 KRT32Q14532 448 aa7.24□□□□□ -1.25
VPS50-205ENST00000441602 TPTE2Q6XPS3 522 aa7.24□□□□□ -1.25
VPS50-205ENST00000441602 CWC22Q9HCG8 908 aaKnown RBP7.24□□□□□ -1.25
VPS50-205ENST00000441602 PAG1Q9NWQ8 432 aa7.24□□□□□ -1.25
VPS50-205ENST00000441602 HMG20BQ9P0W2 317 aa7.24□□□□□ -1.25
VPS50-205ENST00000441602 U3KPZ7 1027 aaPredicted RBP7.24□□□□□ -1.25
VPS50-205ENST00000441602 CCDC171Q6TFL3 1326 aa7.24□□□□□ -1.25
VPS50-205ENST00000441602 UBN2Q6ZU65 1347 aa7.24□□□□□ -1.25
VPS50-205ENST00000441602 NTSR2O95665 410 aa7.24□□□□□ -1.25
VPS50-205ENST00000441602 HSPA4P34932 840 aa7.24□□□□□ -1.25
VPS50-205ENST00000441602 NEK4P51957 841 aa7.24□□□□□ -1.25
VPS50-205ENST00000441602 PUM3Q15397 648 aaKnown RBP7.24□□□□□ -1.25
VPS50-205ENST00000441602 NBPF5PQ86XG9 351 aaPredicted RBP7.24□□□□□ -1.25
VPS50-205ENST00000441602 HELLSQ9NRZ9 838 aa7.24□□□□□ -1.25
VPS50-205ENST00000441602 AK9Q5TCS8 1911 aa7.24□□□□□ -1.25
VPS50-205ENST00000441602 HCLS1P14317 486 aaPredicted RBP7.24□□□□□ -1.25
VPS50-205ENST00000441602 ANKRD18AQ8IVF6 992 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 106 ms