RNA–Protein interactions for RNA: ENST00000399903.6

PTPRA-205, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 5 BASIC

Gene PTPRA, Length 3,337 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-205ENST00000399903 USP44Q9H0E7 712 aa20.11■□□□□ 0.81
PTPRA-205ENST00000399903 NBPF7P0C2Y1 421 aaPredicted RBP20.1■□□□□ 0.81
PTPRA-205ENST00000399903 PLEKHO1Q53GL0 409 aaPredicted RBP20.1■□□□□ 0.81
PTPRA-205ENST00000399903 ERCC4Q92889 916 aaPredicted RBP20.1■□□□□ 0.81
PTPRA-205ENST00000399903 HTATSF1O43719 755 aaKnown RBP20.1■□□□□ 0.81
PTPRA-205ENST00000399903 NR1I2O75469 434 aa20.1■□□□□ 0.81
PTPRA-205ENST00000399903 NEK11Q8NG66 645 aa20.1■□□□□ 0.81
PTPRA-205ENST00000399903 DNAJC2Q99543 621 aaKnown RBP20.1■□□□□ 0.81
PTPRA-205ENST00000399903 HNRNPH2P55795 449 aaKnown RBP20.1■□□□□ 0.81
PTPRA-205ENST00000399903 CHD2O14647 1828 aaKnown RBP20.09■□□□□ 0.81
PTPRA-205ENST00000399903 DDX11Q96FC9 970 aa20.09■□□□□ 0.81
PTPRA-205ENST00000399903 UBTFL1P0CB47 393 aaPredicted RBP20.09■□□□□ 0.81
PTPRA-205ENST00000399903 TMX1Q9H3N1 280 aa20.09■□□□□ 0.81
PTPRA-205ENST00000399903 C19orf44Q9H6X5 657 aa20.09■□□□□ 0.81
PTPRA-205ENST00000399903 CYP46A1Q9Y6A2 500 aa20.09■□□□□ 0.81
PTPRA-205ENST00000399903 CCDC69A6NI79 296 aa20.09■□□□□ 0.81
PTPRA-205ENST00000399903 PPFIA3O75145 1194 aa20.09■□□□□ 0.81
PTPRA-205ENST00000399903 CAPN2P17655 700 aa20.09■□□□□ 0.81
PTPRA-205ENST00000399903 ME3Q16798 604 aa20.09■□□□□ 0.81
PTPRA-205ENST00000399903 MARF1Q9Y4F3 1742 aaKnown RBP20.08■□□□□ 0.81
PTPRA-205ENST00000399903 PXDNQ92626 1479 aa20.08■□□□□ 0.81
PTPRA-205ENST00000399903 SGSM2O43147 1006 aa20.08■□□□□ 0.8
PTPRA-205ENST00000399903 LRRC8AQ8IWT6 810 aa20.08■□□□□ 0.8
PTPRA-205ENST00000399903 TTC14Q96N46 770 aa20.08■□□□□ 0.8
PTPRA-205ENST00000399903 TAOK2Q9UL54 1235 aa20.08■□□□□ 0.8
PTPRA-205ENST00000399903 SLU7O95391 586 aaKnown RBP20.07■□□□□ 0.8
PTPRA-205ENST00000399903 HYPKQ9NX55 129 aa20.07■□□□□ 0.8
PTPRA-205ENST00000399903 TMEM94Q12767 1356 aa20.07■□□□□ 0.8
PTPRA-205ENST00000399903 KIF24Q5T7B8 1368 aa20.07■□□□□ 0.8
PTPRA-205ENST00000399903 RNMTO43148 476 aaKnown RBP20.07■□□□□ 0.8
PTPRA-205ENST00000399903 HOMER1Q86YM7 354 aa20.07■□□□□ 0.8
PTPRA-205ENST00000399903 PTH1RQ03431 593 aa20.07■□□□□ 0.8
PTPRA-205ENST00000399903 SYCP1Q15431 976 aa20.07■□□□□ 0.8
PTPRA-205ENST00000399903 CNTROBQ8N137 903 aa20.07■□□□□ 0.8
PTPRA-205ENST00000399903 FMNL2Q96PY5 1086 aa20.07■□□□□ 0.8
PTPRA-205ENST00000399903 RGPD2P0DJD1 1756 aa20.07■□□□□ 0.8
PTPRA-205ENST00000399903 LTN1O94822 1766 aa20.06■□□□□ 0.8
PTPRA-205ENST00000399903 GNAI3P08754 354 aa20.06■□□□□ 0.8
PTPRA-205ENST00000399903 AKAP4Q5JQC9 854 aa20.06■□□□□ 0.8
PTPRA-205ENST00000399903 CWF19L2Q2TBE0 894 aaKnown RBP20.05■□□□□ 0.8
PTPRA-205ENST00000399903 PPP1R42Q7Z4L9 355 aa20.05■□□□□ 0.8
PTPRA-205ENST00000399903 PLA2G4DQ86XP0 818 aa20.05■□□□□ 0.8
PTPRA-205ENST00000399903 LRRN4CLQ8ND94 238 aa20.05■□□□□ 0.8
PTPRA-205ENST00000399903 MYL6BP14649 208 aa20.05■□□□□ 0.8
PTPRA-205ENST00000399903 SYT10Q6XYQ8 523 aa20.05■□□□□ 0.8
PTPRA-205ENST00000399903 ERO1AQ96HE7 468 aa20.05■□□□□ 0.8
PTPRA-205ENST00000399903 RAB11FIP3O75154 756 aa20.05■□□□□ 0.8
PTPRA-205ENST00000399903 ATP8B2P98198 1209 aa20.05■□□□□ 0.8
PTPRA-205ENST00000399903 FAM177A1Q8N128 213 aaPredicted RBP20.05■□□□□ 0.8
PTPRA-205ENST00000399903 LSG1Q9H089 658 aaKnown RBP20.05■□□□□ 0.8
PTPRA-205ENST00000399903 SRGAP3O43295 1099 aa20.04■□□□□ 0.8
PTPRA-205ENST00000399903 BMS1Q14692 1282 aaKnown RBP20.04■□□□□ 0.8
PTPRA-205ENST00000399903 ARHGAP29Q52LW3 1261 aa20.04■□□□□ 0.8
PTPRA-205ENST00000399903 ZNF446Q9NWS9 450 aa20.04■□□□□ 0.8
PTPRA-205ENST00000399903 NFAT5O94916 1531 aa20.04■□□□□ 0.8
PTPRA-205ENST00000399903 LARP1Q6PKG0 1096 aaKnown RBP20.04■□□□□ 0.8
PTPRA-205ENST00000399903 PAXIP1Q6ZW49 1069 aaPredicted RBP20.04■□□□□ 0.8
PTPRA-205ENST00000399903 CCDC171Q6TFL3 1326 aa20.03■□□□□ 0.8
PTPRA-205ENST00000399903 C11orf57Q6ZUT1 292 aaPredicted RBP20.03■□□□□ 0.8
PTPRA-205ENST00000399903 ZKSCAN1P17029 563 aaPredicted RBP20.03■□□□□ 0.8
PTPRA-205ENST00000399903 COL9A3Q14050 684 aaPredicted RBP20.03■□□□□ 0.8
PTPRA-205ENST00000399903 RAPGEF4Q8WZA2 1011 aa20.03■□□□□ 0.8
PTPRA-205ENST00000399903 TPCN1Q9ULQ1 816 aa20.03■□□□□ 0.8
PTPRA-205ENST00000399903 SNW1Q13573 536 aaKnown RBP20.02■□□□□ 0.8
PTPRA-205ENST00000399903 NFATC2IPQ8NCF5 419 aa20.02■□□□□ 0.8
PTPRA-205ENST00000399903 SALL3Q9BXA9 1300 aa20.02■□□□□ 0.8
PTPRA-205ENST00000399903 DNAAF4Q8WXU2 420 aa20.02■□□□□ 0.8
PTPRA-205ENST00000399903 C1orf167Q5SNV9 1468 aa20.02■□□□□ 0.79
PTPRA-205ENST00000399903 H3BQV1 296 aa20.02■□□□□ 0.79
PTPRA-205ENST00000399903 IFFO2Q5TF58 517 aa20.02■□□□□ 0.79
PTPRA-205ENST00000399903 ZCCHC17Q9NP64 241 aaKnown RBP20.02■□□□□ 0.79
PTPRA-205ENST00000399903 DDX19AQ9NUU7 478 aaKnown RBP20.02■□□□□ 0.79
PTPRA-205ENST00000399903 MAP3K2Q9Y2U5 619 aa20.02■□□□□ 0.79
PTPRA-205ENST00000399903 CEMIPQ8WUJ3 1361 aa20.02■□□□□ 0.79
PTPRA-205ENST00000399903 LEO1Q8WVC0 666 aaPredicted RBP20.01■□□□□ 0.79
PTPRA-205ENST00000399903 GNL2Q13823 731 aaKnown RBP20.01■□□□□ 0.79
PTPRA-205ENST00000399903 C10orf67Q8IYJ2 551 aa20.01■□□□□ 0.79
PTPRA-205ENST00000399903 TDRD7Q8NHU6 1098 aaKnown RBP20.01■□□□□ 0.79
PTPRA-205ENST00000399903 CLSTN2Q9H4D0 955 aa20.01■□□□□ 0.79
PTPRA-205ENST00000399903 SMC2O95347 1197 aa20.01■□□□□ 0.79
PTPRA-205ENST00000399903 RHPN1Q8TCX5 695 aa20.01■□□□□ 0.79
PTPRA-205ENST00000399903 PA2G4Q9UQ80 394 aaKnown RBP20.01■□□□□ 0.79
PTPRA-205ENST00000399903 ERBB3P21860 1342 aa20■□□□□ 0.79
PTPRA-205ENST00000399903 CLCN6P51797 869 aa20■□□□□ 0.79
PTPRA-205ENST00000399903 SCAND2PQ9GZW5 306 aaPredicted RBP20■□□□□ 0.79
PTPRA-205ENST00000399903 SEC31AO94979 1220 aaKnown RBP20■□□□□ 0.79
PTPRA-205ENST00000399903 TEX35Q5T0J7 233 aa20■□□□□ 0.79
PTPRA-205ENST00000399903 CCDC34Q96HJ3 373 aa20■□□□□ 0.79
PTPRA-205ENST00000399903 HSP90B1P14625 803 aaKnown RBP19.99■□□□□ 0.79
PTPRA-205ENST00000399903 EPC1Q9H2F5 836 aa19.99■□□□□ 0.79
PTPRA-205ENST00000399903 RAD51AP2Q09MP3 1159 aa19.99■□□□□ 0.79
PTPRA-205ENST00000399903 ST3GAL1Q11201 340 aa19.99■□□□□ 0.79
PTPRA-205ENST00000399903 ARHGAP30Q7Z6I6 1101 aaPredicted RBP19.99■□□□□ 0.79
PTPRA-205ENST00000399903 CCAR2Q8N163 923 aaKnown RBP19.99■□□□□ 0.79
PTPRA-205ENST00000399903 ZSCAN31Q96LW9 406 aaPredicted RBP19.99■□□□□ 0.79
PTPRA-205ENST00000399903 GIGYF1O75420 1035 aaPredicted RBP19.99■□□□□ 0.79
PTPRA-205ENST00000399903 KRBA2Q6ZNG9 492 aa19.99■□□□□ 0.79
PTPRA-205ENST00000399903 SH2B1Q9NRF2 756 aaPredicted RBP19.99■□□□□ 0.79
PTPRA-205ENST00000399903 STAP2Q9UGK3 403 aa19.99■□□□□ 0.79
PTPRA-205ENST00000399903 ADAMTSL3P82987 1691 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms