RNA–Protein interactions for RNA: ENST00000372066.7

LDB3-204, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,598 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-204ENST00000372066 DNAAF4Q8WXU2 420 aa17.29■□□□□ 0.36
LDB3-204ENST00000372066 ST5P78524 1137 aa17.28■□□□□ 0.36
LDB3-204ENST00000372066 USP44Q9H0E7 712 aa17.28■□□□□ 0.36
LDB3-204ENST00000372066 CHPF2Q9P2E5 772 aa17.28■□□□□ 0.36
LDB3-204ENST00000372066 AOX1Q06278 1338 aa17.28■□□□□ 0.36
LDB3-204ENST00000372066 PRAMEF22A3QJZ6 481 aa17.28■□□□□ 0.36
LDB3-204ENST00000372066 ALDH1L1O75891 902 aa17.28■□□□□ 0.36
LDB3-204ENST00000372066 SNRPA1P09661 255 aaKnown RBP17.28■□□□□ 0.36
LDB3-204ENST00000372066 EIF2S2P20042 333 aaKnown RBP17.28■□□□□ 0.36
LDB3-204ENST00000372066 ERFEQ4G0M1 354 aa17.28■□□□□ 0.36
LDB3-204ENST00000372066 CNKSR1Q969H4 720 aa17.28■□□□□ 0.36
LDB3-204ENST00000372066 LRRCC1Q9C099 1032 aa17.28■□□□□ 0.36
LDB3-204ENST00000372066 PHAXQ9H814 394 aaKnown RBP17.28■□□□□ 0.36
LDB3-204ENST00000372066 NRXN2Q9P2S2 1712 aa17.27■□□□□ 0.36
LDB3-204ENST00000372066 AFDNP55196 1824 aaKnown RBP17.27■□□□□ 0.36
LDB3-204ENST00000372066 AK9Q5TCS8 1911 aa17.27■□□□□ 0.36
LDB3-204ENST00000372066 RAB11FIP3O75154 756 aa17.27■□□□□ 0.35
LDB3-204ENST00000372066 HYPKQ9NX55 129 aa17.27■□□□□ 0.35
LDB3-204ENST00000372066 UBR2Q8IWV8 1755 aa17.26■□□□□ 0.35
LDB3-204ENST00000372066 BEND3Q5T5X7 828 aa17.26■□□□□ 0.35
LDB3-204ENST00000372066 STYK1Q6J9G0 422 aa17.26■□□□□ 0.35
LDB3-204ENST00000372066 SSH3Q8TE77 659 aa17.26■□□□□ 0.35
LDB3-204ENST00000372066 ANTXR1Q9H6X2 564 aa17.26■□□□□ 0.35
LDB3-204ENST00000372066 LRRFIP2Q9Y608 721 aaKnown RBP17.26■□□□□ 0.35
LDB3-204ENST00000372066 SRGNP10124 158 aa17.25■□□□□ 0.35
LDB3-204ENST00000372066 CLEC4GQ6UXB4 293 aa17.25■□□□□ 0.35
LDB3-204ENST00000372066 NBPF5PQ86XG9 351 aaPredicted RBP17.25■□□□□ 0.35
LDB3-204ENST00000372066 JMYQ8N9B5 988 aa17.25■□□□□ 0.35
LDB3-204ENST00000372066 MASTLQ96GX5 879 aa17.25■□□□□ 0.35
LDB3-204ENST00000372066 TAOK3Q9H2K8 898 aa17.25■□□□□ 0.35
LDB3-204ENST00000372066 SALL3Q9BXA9 1300 aa17.25■□□□□ 0.35
LDB3-204ENST00000372066 POLA2Q14181 598 aa17.24■□□□□ 0.35
LDB3-204ENST00000372066 ZNF652Q9Y2D9 606 aa17.24■□□□□ 0.35
LDB3-204ENST00000372066 SBF1O95248 1867 aa17.24■□□□□ 0.35
LDB3-204ENST00000372066 PI4KAP2A4QPH2 592 aa17.23■□□□□ 0.35
LDB3-204ENST00000372066 POTECB2RU33 542 aa17.23■□□□□ 0.35
LDB3-204ENST00000372066 DDX58O95786 925 aaKnown RBP17.23■□□□□ 0.35
LDB3-204ENST00000372066 PDE1AP54750 535 aa17.23■□□□□ 0.35
LDB3-204ENST00000372066 HSP90AB4PQ58FF6 505 aa17.23■□□□□ 0.35
LDB3-204ENST00000372066 PRPF40BQ6NWY9 871 aaKnown RBP17.23■□□□□ 0.35
LDB3-204ENST00000372066 PI4KAP1Q8N8J0 262 aa17.23■□□□□ 0.35
LDB3-204ENST00000372066 DDX21Q9NR30 783 aaKnown RBP eCLIP17.23■□□□□ 0.35
LDB3-204ENST00000372066 PNMA6EA0A0J9YXQ4 647 aa17.23■□□□□ 0.35
LDB3-204ENST00000372066 SMARCA5O60264 1052 aaPredicted RBP17.23■□□□□ 0.35
LDB3-204ENST00000372066 SDSP20132 328 aa17.23■□□□□ 0.35
LDB3-204ENST00000372066 DEKP35659 375 aaKnown RBP17.23■□□□□ 0.35
LDB3-204ENST00000372066 SOGA3Q5TF21 947 aa17.23■□□□□ 0.35
LDB3-204ENST00000372066 KSR2Q6VAB6 950 aa17.23■□□□□ 0.35
LDB3-204ENST00000372066 STAP2Q9UGK3 403 aa17.23■□□□□ 0.35
LDB3-204ENST00000372066 NBPF26B4DH59 902 aa17.22■□□□□ 0.35
LDB3-204ENST00000372066 REC8O95072 547 aa17.22■□□□□ 0.35
LDB3-204ENST00000372066 MTX1Q13505 466 aa17.22■□□□□ 0.35
LDB3-204ENST00000372066 NBPF10Q6P3W6 841 aaKnown RBP17.22■□□□□ 0.35
LDB3-204ENST00000372066 TPTE2Q6XPS3 522 aa17.22■□□□□ 0.35
LDB3-204ENST00000372066 NBPF15Q8N660 670 aa17.22■□□□□ 0.35
LDB3-204ENST00000372066 EXOC6BQ9Y2D4 811 aa17.22■□□□□ 0.35
LDB3-204ENST00000372066 LTBP3Q9NS15 1303 aa17.22■□□□□ 0.35
LDB3-204ENST00000372066 FAM177BA6PVY3 158 aa17.21■□□□□ 0.35
LDB3-204ENST00000372066 NIP7Q9Y221 180 aaKnown RBP eCLIP17.21■□□□□ 0.35
LDB3-204ENST00000372066 TNRC6CQ9HCJ0 1690 aaKnown RBP17.2■□□□□ 0.34
LDB3-204ENST00000372066 APBB1O00213 710 aa17.2■□□□□ 0.34
LDB3-204ENST00000372066 DDNO94850 711 aaPredicted RBP17.2■□□□□ 0.34
LDB3-204ENST00000372066 MX1P20591 662 aa17.2■□□□□ 0.34
LDB3-204ENST00000372066 OTUD7AQ8TE49 926 aaPredicted RBP17.2■□□□□ 0.34
LDB3-204ENST00000372066 CHMP5Q9NZZ3 219 aa17.2■□□□□ 0.34
LDB3-204ENST00000372066 WDR90Q96KV7 1748 aa17.2■□□□□ 0.34
LDB3-204ENST00000372066 NPR1P16066 1061 aa17.19■□□□□ 0.34
LDB3-204ENST00000372066 RABEP1Q15276 862 aa17.19■□□□□ 0.34
LDB3-204ENST00000372066 SLKQ9H2G2 1235 aaPredicted RBP17.19■□□□□ 0.34
LDB3-204ENST00000372066 DLEC1Q9Y238 1755 aa17.19■□□□□ 0.34
LDB3-204ENST00000372066 PPP1R42Q7Z4L9 355 aa17.19■□□□□ 0.34
LDB3-204ENST00000372066 LINS1Q8NG48 757 aa17.19■□□□□ 0.34
LDB3-204ENST00000372066 C7orf43Q8WVR3 580 aa17.19■□□□□ 0.34
LDB3-204ENST00000372066 KIF1BPQ96EK5 621 aa17.19■□□□□ 0.34
LDB3-204ENST00000372066 KIF2CQ99661 725 aa17.19■□□□□ 0.34
LDB3-204ENST00000372066 CIZ1Q9ULV3 898 aaPredicted RBP17.19■□□□□ 0.34
LDB3-204ENST00000372066 UTYO14607 1347 aa17.18■□□□□ 0.34
LDB3-204ENST00000372066 GTF2E1P29083 439 aaPredicted RBP17.18■□□□□ 0.34
LDB3-204ENST00000372066 HLFQ16534 295 aa17.18■□□□□ 0.34
LDB3-204ENST00000372066 CCDC93Q567U6 631 aa17.18■□□□□ 0.34
LDB3-204ENST00000372066 COL13A1Q5TAT6 717 aaPredicted RBP17.18■□□□□ 0.34
LDB3-204ENST00000372066 MAP3K2Q9Y2U5 619 aa17.18■□□□□ 0.34
LDB3-204ENST00000372066 ARFGEF2Q9Y6D5 1785 aa17.18■□□□□ 0.34
LDB3-204ENST00000372066 SCN7AQ01118 1682 aa17.17■□□□□ 0.34
LDB3-204ENST00000372066 KLRG2A4D1S0 409 aaPredicted RBP17.17■□□□□ 0.34
LDB3-204ENST00000372066 ERC2O15083 957 aa17.17■□□□□ 0.34
LDB3-204ENST00000372066 RGL2O15211 777 aa17.17■□□□□ 0.34
LDB3-204ENST00000372066 EPB41L2O43491 1005 aaKnown RBP17.17■□□□□ 0.34
LDB3-204ENST00000372066 IL27Q8NEV9 243 aa17.17■□□□□ 0.34
LDB3-204ENST00000372066 USP26Q9BXU7 913 aa17.17■□□□□ 0.34
LDB3-204ENST00000372066 ANKRD31Q8N7Z5 1873 aa17.16■□□□□ 0.34
LDB3-204ENST00000372066 CHADLQ6NUI6 762 aa17.16■□□□□ 0.34
LDB3-204ENST00000372066 ERBB4Q15303 1308 aa17.16■□□□□ 0.34
LDB3-204ENST00000372066 SRGAP3O43295 1099 aa17.15■□□□□ 0.34
LDB3-204ENST00000372066 NBPF7P0C2Y1 421 aaPredicted RBP17.15■□□□□ 0.34
LDB3-204ENST00000372066 ERC1Q8IUD2 1116 aa17.15■□□□□ 0.34
LDB3-204ENST00000372066 C9orf78Q9NZ63 289 aaPredicted RBP17.15■□□□□ 0.34
LDB3-204ENST00000372066 K7ELQ4 463 aaPredicted RBP17.15■□□□□ 0.34
LDB3-204ENST00000372066 FRAT2O75474 233 aaPredicted RBP17.15■□□□□ 0.34
LDB3-204ENST00000372066 SURF6O75683 361 aaKnown RBP17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms