RNA–Protein interactions for RNA: ENST00000369530.5

CSDE1-204, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,774 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-204ENST00000369530 PHAXQ9H814 394 aaKnown RBP8.68□□□□□ -1.02
CSDE1-204ENST00000369530 CENPFP49454 3210 aa8.68□□□□□ -1.02
CSDE1-204ENST00000369530 ZNF236Q9UL36 1845 aa8.68□□□□□ -1.02
CSDE1-204ENST00000369530 METTL22Q9BUU2 404 aaPredicted RBP8.68□□□□□ -1.02
CSDE1-204ENST00000369530 STARD3NLO95772 234 aa8.67□□□□□ -1.02
CSDE1-204ENST00000369530 CT47B1P0C2W7 299 aaPredicted RBP8.67□□□□□ -1.02
CSDE1-204ENST00000369530 PTCD1O75127 700 aaKnown RBP8.67□□□□□ -1.02
CSDE1-204ENST00000369530 COL2A1P02458 1487 aaPredicted RBP8.67□□□□□ -1.02
CSDE1-204ENST00000369530 FSD2A1L4K1 749 aa8.67□□□□□ -1.02
CSDE1-204ENST00000369530 GNAI1P63096 354 aa8.67□□□□□ -1.02
CSDE1-204ENST00000369530 MTX1Q13505 466 aa8.67□□□□□ -1.02
CSDE1-204ENST00000369530 ALDH1L2Q3SY69 923 aa8.67□□□□□ -1.02
CSDE1-204ENST00000369530 DZIP3Q86Y13 1208 aaKnown RBP8.67□□□□□ -1.02
CSDE1-204ENST00000369530 ANKRD44Q8N8A2 993 aa8.67□□□□□ -1.02
CSDE1-204ENST00000369530 ZNF784Q8NCA9 323 aaPredicted RBP8.67□□□□□ -1.02
CSDE1-204ENST00000369530 ERFEQ4G0M1 354 aa8.66□□□□□ -1.02
CSDE1-204ENST00000369530 NEURL1BA8MQ27 555 aa8.66□□□□□ -1.02
CSDE1-204ENST00000369530 PCCAP05165 728 aaPredicted RBP8.66□□□□□ -1.02
CSDE1-204ENST00000369530 SYNE4Q8N205 404 aa8.66□□□□□ -1.02
CSDE1-204ENST00000369530 ZNF428Q96B54 188 aa8.66□□□□□ -1.02
CSDE1-204ENST00000369530 U2SURPO15042 1029 aaKnown RBP8.66□□□□□ -1.02
CSDE1-204ENST00000369530 NAP1L2Q9ULW6 460 aaPredicted RBP8.66□□□□□ -1.02
CSDE1-204ENST00000369530 LAS1LQ9Y4W2 734 aaKnown RBP8.66□□□□□ -1.02
CSDE1-204ENST00000369530 PDE4AP27815 886 aa8.65□□□□□ -1.02
CSDE1-204ENST00000369530 KLHL34Q8N239 644 aa8.65□□□□□ -1.02
CSDE1-204ENST00000369530 ZBTB38Q8NAP3 1195 aaPredicted RBP8.65□□□□□ -1.02
CSDE1-204ENST00000369530 HYPKQ9NX55 129 aa8.65□□□□□ -1.02
CSDE1-204ENST00000369530 ZSWIM8A7E2V4 1837 aa8.65□□□□□ -1.02
CSDE1-204ENST00000369530 DBF4Q9UBU7 674 aaPredicted RBP8.65□□□□□ -1.02
CSDE1-204ENST00000369530 ATRNL1Q5VV63 1379 aa8.65□□□□□ -1.03
CSDE1-204ENST00000369530 PARP10Q53GL7 1025 aa8.65□□□□□ -1.03
CSDE1-204ENST00000369530 MSL1Q68DK7 614 aa8.65□□□□□ -1.03
CSDE1-204ENST00000369530 A0A0G2JLW4 131 aa8.64□□□□□ -1.03
CSDE1-204ENST00000369530 CHRNA5P30532 468 aa8.64□□□□□ -1.03
CSDE1-204ENST00000369530 ARHGAP45Q92619 1136 aa8.64□□□□□ -1.03
CSDE1-204ENST00000369530 YDJCA8MPS7 323 aa8.64□□□□□ -1.03
CSDE1-204ENST00000369530 NCLP19338 710 aaKnown RBP8.64□□□□□ -1.03
CSDE1-204ENST00000369530 FGFR2P21802 821 aa8.64□□□□□ -1.03
CSDE1-204ENST00000369530 PIP4K2AP48426 406 aaPredicted RBP8.64□□□□□ -1.03
CSDE1-204ENST00000369530 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.64□□□□□ -1.03
CSDE1-204ENST00000369530 MASTLQ96GX5 879 aa8.63□□□□□ -1.03
CSDE1-204ENST00000369530 MED23Q9ULK4 1368 aa8.63□□□□□ -1.03
CSDE1-204ENST00000369530 NPR1P16066 1061 aa8.63□□□□□ -1.03
CSDE1-204ENST00000369530 GRIPAP1Q4V328 841 aa8.63□□□□□ -1.03
CSDE1-204ENST00000369530 CCDC191Q8NCU4 936 aa8.63□□□□□ -1.03
CSDE1-204ENST00000369530 ATP6V0A2Q9Y487 856 aa8.63□□□□□ -1.03
CSDE1-204ENST00000369530 ZNF804BA4D1E1 1349 aa8.63□□□□□ -1.03
CSDE1-204ENST00000369530 EPHA10Q5JZY3 1008 aa8.63□□□□□ -1.03
CSDE1-204ENST00000369530 INTS3Q68E01 1043 aaKnown RBP8.63□□□□□ -1.03
CSDE1-204ENST00000369530 KSR2Q6VAB6 950 aa8.63□□□□□ -1.03
CSDE1-204ENST00000369530 XAGE3Q8WTP9 111 aa8.63□□□□□ -1.03
CSDE1-204ENST00000369530 TSR2Q969E8 191 aaKnown RBP8.62□□□□□ -1.03
CSDE1-204ENST00000369530 RRP7AQ9Y3A4 280 aaKnown RBP8.62□□□□□ -1.03
CSDE1-204ENST00000369530 COPS6Q7L5N1 327 aa8.62□□□□□ -1.03
CSDE1-204ENST00000369530 TSPYL4Q9UJ04 414 aa8.62□□□□□ -1.03
CSDE1-204ENST00000369530 AK9Q5TCS8 1911 aa8.62□□□□□ -1.03
CSDE1-204ENST00000369530 PTPRCP08575 1304 aa8.62□□□□□ -1.03
CSDE1-204ENST00000369530 RFC4P35249 363 aa8.62□□□□□ -1.03
CSDE1-204ENST00000369530 FKBP4Q02790 459 aaKnown RBP eCLIP8.62□□□□□ -1.03
CSDE1-204ENST00000369530 TEFQ10587 303 aa8.62□□□□□ -1.03
CSDE1-204ENST00000369530 SP8Q8IXZ3 490 aa8.62□□□□□ -1.03
CSDE1-204ENST00000369530 TTLL11Q8NHH1 800 aa8.62□□□□□ -1.03
CSDE1-204ENST00000369530 RBM42Q9BTD8 480 aaKnown RBP8.62□□□□□ -1.03
CSDE1-204ENST00000369530 JMYQ8N9B5 988 aa8.61□□□□□ -1.03
CSDE1-204ENST00000369530 SYTL4Q96C24 671 aaPredicted RBP8.61□□□□□ -1.03
CSDE1-204ENST00000369530 TBC1D2BQ9UPU7 963 aa8.61□□□□□ -1.03
CSDE1-204ENST00000369530 MYH1P12882 1939 aa8.61□□□□□ -1.03
CSDE1-204ENST00000369530 ZNF541Q9H0D2 1346 aa8.61□□□□□ -1.03
CSDE1-204ENST00000369530 SCNN1DP51172 638 aa8.61□□□□□ -1.03
CSDE1-204ENST00000369530 PRPF40BQ6NWY9 871 aaKnown RBP8.61□□□□□ -1.03
CSDE1-204ENST00000369530 NAP1L5Q96NT1 182 aaPredicted RBP8.61□□□□□ -1.03
CSDE1-204ENST00000369530 PHF14O94880 888 aa8.61□□□□□ -1.03
CSDE1-204ENST00000369530 ITGBL1O95965 494 aaPredicted RBP8.61□□□□□ -1.03
CSDE1-204ENST00000369530 RGS3P49796 1198 aa8.61□□□□□ -1.03
CSDE1-204ENST00000369530 RARSP54136 660 aaKnown RBP8.61□□□□□ -1.03
CSDE1-204ENST00000369530 GCKRQ14397 625 aa8.61□□□□□ -1.03
CSDE1-204ENST00000369530 ISY1Q9ULR0 285 aaKnown RBP8.6□□□□□ -1.03
CSDE1-204ENST00000369530 PDS5AQ29RF7 1337 aaKnown RBP8.6□□□□□ -1.03
CSDE1-204ENST00000369530 ALPK3Q96L96 1907 aa8.6□□□□□ -1.03
CSDE1-204ENST00000369530 ZNF280AP59817 542 aaPredicted RBP8.6□□□□□ -1.03
CSDE1-204ENST00000369530 FKBP1AP62942 108 aaKnown RBP8.6□□□□□ -1.03
CSDE1-204ENST00000369530 POLA2Q14181 598 aa8.6□□□□□ -1.03
CSDE1-204ENST00000369530 WDR43Q15061 677 aaKnown RBP eCLIP8.6□□□□□ -1.03
CSDE1-204ENST00000369530 MTERF4Q7Z6M4 381 aaKnown RBP8.6□□□□□ -1.03
CSDE1-204ENST00000369530 CDCA7LQ96GN5 454 aa8.6□□□□□ -1.03
CSDE1-204ENST00000369530 WTIPA6NIX2 430 aaPredicted RBP8.6□□□□□ -1.03
CSDE1-204ENST00000369530 PDE6BP35913 854 aa8.6□□□□□ -1.03
CSDE1-204ENST00000369530 DMTNQ08495 405 aa8.6□□□□□ -1.03
CSDE1-204ENST00000369530 OLFM4Q6UX06 510 aa8.6□□□□□ -1.03
CSDE1-204ENST00000369530 BBXQ8WY36 941 aaPredicted RBP8.6□□□□□ -1.03
CSDE1-204ENST00000369530 PIM2Q9P1W9 311 aa8.6□□□□□ -1.03
CSDE1-204ENST00000369530 GRIN3BO60391 1043 aa8.59□□□□□ -1.03
CSDE1-204ENST00000369530 USP44Q9H0E7 712 aa8.59□□□□□ -1.03
CSDE1-204ENST00000369530 MYH8P13535 1937 aa8.59□□□□□ -1.03
CSDE1-204ENST00000369530 SALL3Q9BXA9 1300 aa8.59□□□□□ -1.03
CSDE1-204ENST00000369530 POLLQ9UGP5 575 aa8.59□□□□□ -1.03
CSDE1-204ENST00000369530 RIPOR2Q9Y4F9 1068 aa8.59□□□□□ -1.03
CSDE1-204ENST00000369530 GRAPQ13588 217 aa8.59□□□□□ -1.04
CSDE1-204ENST00000369530 ANKRD13DQ6ZTN6 518 aa8.59□□□□□ -1.04
CSDE1-204ENST00000369530 ATG9AQ7Z3C6 839 aa8.59□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 375 ms