RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 PDLIM4P50479 330 aa11.37□□□□□ -0.59
SF3B3-202ENST00000562722 CLNS1AP54105 237 aaKnown RBP11.37□□□□□ -0.59
SF3B3-202ENST00000562722 NME5P56597 212 aa11.37□□□□□ -0.59
SF3B3-202ENST00000562722 ABCE1P61221 599 aaKnown RBP11.37□□□□□ -0.59
SF3B3-202ENST00000562722 SNRPD2P62316 118 aaKnown RBP11.37□□□□□ -0.59
SF3B3-202ENST00000562722 LSM11P83369 360 aaKnown RBP eCLIP11.37□□□□□ -0.59
SF3B3-202ENST00000562722 SLC25A3Q00325 362 aa11.37□□□□□ -0.59
SF3B3-202ENST00000562722 CHI3L2Q15782 390 aa11.37□□□□□ -0.59
SF3B3-202ENST00000562722 SPANXN4Q5MJ08 99 aa11.37□□□□□ -0.59
SF3B3-202ENST00000562722 OTUD3Q5T2D3 398 aaPredicted RBP11.37□□□□□ -0.59
SF3B3-202ENST00000562722 AAED1Q7RTV5 226 aa11.37□□□□□ -0.59
SF3B3-202ENST00000562722 GPAT4Q86UL3 456 aa11.37□□□□□ -0.59
SF3B3-202ENST00000562722 ANKFN1Q8N957 763 aa11.37□□□□□ -0.59
SF3B3-202ENST00000562722 WDR60Q8WVS4 1066 aa11.37□□□□□ -0.59
SF3B3-202ENST00000562722 PROX1Q92786 737 aa11.37□□□□□ -0.59
SF3B3-202ENST00000562722 TESCQ96BS2 214 aa11.37□□□□□ -0.59
SF3B3-202ENST00000562722 C3orf49Q96BT1 292 aa11.37□□□□□ -0.59
SF3B3-202ENST00000562722 PIMREGQ9BSJ6 248 aa11.37□□□□□ -0.59
SF3B3-202ENST00000562722 TMEM160Q9NX00 188 aa11.37□□□□□ -0.59
SF3B3-202ENST00000562722 OSGIN1Q9UJX0 560 aa11.37□□□□□ -0.59
SF3B3-202ENST00000562722 NUP214P35658 2090 aaPredicted RBP11.37□□□□□ -0.59
SF3B3-202ENST00000562722 ZC3H12DA2A288 527 aaKnown RBP11.36□□□□□ -0.59
SF3B3-202ENST00000562722 CFAP73A6NFT4 308 aa11.36□□□□□ -0.59
SF3B3-202ENST00000562722 E9PBE3 544 aa11.36□□□□□ -0.59
SF3B3-202ENST00000562722 PDLIM1O00151 329 aa11.36□□□□□ -0.59
SF3B3-202ENST00000562722 HMGN4O00479 90 aa11.36□□□□□ -0.59
SF3B3-202ENST00000562722 LMX1BO60663 402 aa11.36□□□□□ -0.59
SF3B3-202ENST00000562722 F12P00748 615 aaPredicted RBP11.36□□□□□ -0.59
SF3B3-202ENST00000562722 NR2F1P10589 423 aa11.36□□□□□ -0.59
SF3B3-202ENST00000562722 SRD5A1P18405 259 aa11.36□□□□□ -0.59
SF3B3-202ENST00000562722 MPGP29372 298 aa11.36□□□□□ -0.59
SF3B3-202ENST00000562722 SLC1A3P43003 542 aa11.36□□□□□ -0.59
SF3B3-202ENST00000562722 GZMKP49863 264 aa11.36□□□□□ -0.59
SF3B3-202ENST00000562722 ANXA11P50995 505 aaKnown RBP11.36□□□□□ -0.59
SF3B3-202ENST00000562722 H3F3AP84243 136 aa11.36□□□□□ -0.59
SF3B3-202ENST00000562722 PLAURQ03405 335 aa11.36□□□□□ -0.59
SF3B3-202ENST00000562722 CEACAM7Q14002 265 aa11.36□□□□□ -0.59
SF3B3-202ENST00000562722 SLC17A1Q14916 467 aa11.36□□□□□ -0.59
SF3B3-202ENST00000562722 OR7A5Q15622 319 aa11.36□□□□□ -0.59
SF3B3-202ENST00000562722 SYPL1Q16563 259 aa11.36□□□□□ -0.59
SF3B3-202ENST00000562722 DPY19L1Q2PZI1 675 aa11.36□□□□□ -0.59
SF3B3-202ENST00000562722 FAM174BQ3ZCQ3 159 aa11.36□□□□□ -0.59
SF3B3-202ENST00000562722 HIKESHIQ53FT3 197 aa11.36□□□□□ -0.59
SF3B3-202ENST00000562722 FAM166AQ6J272 317 aa11.36□□□□□ -0.59
SF3B3-202ENST00000562722 PAQR6Q6TCH4 344 aa11.36□□□□□ -0.59
SF3B3-202ENST00000562722 SLC46A3Q7Z3Q1 461 aa11.36□□□□□ -0.59
SF3B3-202ENST00000562722 ABHD12BQ7Z5M8 362 aaPredicted RBP11.36□□□□□ -0.59
SF3B3-202ENST00000562722 CMIPQ8IY22 773 aa11.36□□□□□ -0.59
SF3B3-202ENST00000562722 TRIML2Q8N7C3 387 aa11.36□□□□□ -0.59
SF3B3-202ENST00000562722 ARIH2OSQ8N7S6 290 aa11.36□□□□□ -0.59
SF3B3-202ENST00000562722 POMGNT2Q8NAT1 580 aa11.36□□□□□ -0.59
SF3B3-202ENST00000562722 OR9K2Q8NGE7 335 aa11.36□□□□□ -0.59
SF3B3-202ENST00000562722 TRNT1Q96Q11 434 aaKnown RBP11.36□□□□□ -0.59
SF3B3-202ENST00000562722 PANX1Q96RD7 426 aa11.36□□□□□ -0.59
SF3B3-202ENST00000562722 VRK1Q99986 396 aaPredicted RBP11.36□□□□□ -0.59
SF3B3-202ENST00000562722 NUF2Q9BZD4 464 aa11.36□□□□□ -0.59
SF3B3-202ENST00000562722 ROPN1BQ9BZX4 212 aaPredicted RBP11.36□□□□□ -0.59
SF3B3-202ENST00000562722 ROPN1Q9HAT0 212 aaPredicted RBP11.36□□□□□ -0.59
SF3B3-202ENST00000562722 KCNS2Q9ULS6 477 aa11.36□□□□□ -0.59
SF3B3-202ENST00000562722 RAP2CQ9Y3L5 183 aa11.36□□□□□ -0.59
SF3B3-202ENST00000562722 MXRA5Q9NR99 2828 aa11.36□□□□□ -0.59
SF3B3-202ENST00000562722 LOC100289279A0A1B0GTE1 492 aa11.35□□□□□ -0.59
SF3B3-202ENST00000562722 PRAMEF27A3QJZ7 478 aa11.35□□□□□ -0.59
SF3B3-202ENST00000562722 CCDC154A6NI56 674 aa11.35□□□□□ -0.59
SF3B3-202ENST00000562722 AGAP5A6NIR3 686 aa11.35□□□□□ -0.59
SF3B3-202ENST00000562722 TYROBPO43914 113 aa11.35□□□□□ -0.59
SF3B3-202ENST00000562722 AKR7A3O95154 331 aa11.35□□□□□ -0.59
SF3B3-202ENST00000562722 C1QCP02747 245 aa11.35□□□□□ -0.59
SF3B3-202ENST00000562722 GPIP06744 558 aa11.35□□□□□ -0.59
SF3B3-202ENST00000562722 CHRM4P08173 479 aa11.35□□□□□ -0.59
SF3B3-202ENST00000562722 LBPP18428 481 aa11.35□□□□□ -0.59
SF3B3-202ENST00000562722 HNF1AP20823 631 aa11.35□□□□□ -0.59
SF3B3-202ENST00000562722 CXCR1P25024 350 aa11.35□□□□□ -0.59
SF3B3-202ENST00000562722 ETV4P43268 484 aa11.35□□□□□ -0.59
SF3B3-202ENST00000562722 RPL14P50914 215 aaKnown RBP11.35□□□□□ -0.59
SF3B3-202ENST00000562722 MAP2K6P52564 334 aa11.35□□□□□ -0.59
SF3B3-202ENST00000562722 UBE2NP61088 152 aaKnown RBP11.35□□□□□ -0.59
SF3B3-202ENST00000562722 CASP8Q14790 479 aa11.35□□□□□ -0.59
SF3B3-202ENST00000562722 IQCCQ4KMZ1 466 aa11.35□□□□□ -0.59
SF3B3-202ENST00000562722 MRPL2Q5T653 305 aaKnown RBP11.35□□□□□ -0.59
SF3B3-202ENST00000562722 ZNF621Q6ZSS3 439 aa11.35□□□□□ -0.59
SF3B3-202ENST00000562722 IL17RELQ6ZVW7 336 aa11.35□□□□□ -0.59
SF3B3-202ENST00000562722 SPATA19Q7Z5L4 167 aa11.35□□□□□ -0.59
SF3B3-202ENST00000562722 CADM2Q8N3J6 435 aa11.35□□□□□ -0.59
SF3B3-202ENST00000562722 TMEM99Q8N816 258 aa11.35□□□□□ -0.59
SF3B3-202ENST00000562722 PNPT1Q8TCS8 783 aaKnown RBP11.35□□□□□ -0.59
SF3B3-202ENST00000562722 TMEM45BQ96B21 275 aa11.35□□□□□ -0.59
SF3B3-202ENST00000562722 AURKBQ96GD4 344 aaPredicted RBP11.35□□□□□ -0.59
SF3B3-202ENST00000562722 CCDC115Q96NT0 180 aa11.35□□□□□ -0.59
SF3B3-202ENST00000562722 TAPBPLQ9BX59 468 aa11.35□□□□□ -0.59
SF3B3-202ENST00000562722 SLC38A1Q9H2H9 487 aa11.35□□□□□ -0.59
SF3B3-202ENST00000562722 TMEM45AQ9NWC5 275 aa11.35□□□□□ -0.59
SF3B3-202ENST00000562722 ADPRHL2Q9NX46 363 aa11.35□□□□□ -0.59
SF3B3-202ENST00000562722 ALPK2Q86TB3 2170 aa11.34□□□□□ -0.59
SF3B3-202ENST00000562722 ZNF587BE7ETH6 402 aa11.34□□□□□ -0.59
SF3B3-202ENST00000562722 HAX1O00165 279 aa11.34□□□□□ -0.59
SF3B3-202ENST00000562722 GSNP06396 782 aa11.34□□□□□ -0.59
SF3B3-202ENST00000562722 DBIP07108 87 aaKnown RBP11.34□□□□□ -0.59
SF3B3-202ENST00000562722 APEHP13798 732 aaKnown RBP11.34□□□□□ -0.59
SF3B3-202ENST00000562722 SLC1A6P48664 564 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms