RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 TBX21Q9UL17 535 aa12.86□□□□□ -0.35
VPS9D1-202ENST00000561976 DOCK9Q9BZ29 2069 aa12.86□□□□□ -0.35
VPS9D1-202ENST00000561976 TUBAL3A6NHL2 446 aa12.86□□□□□ -0.35
VPS9D1-202ENST00000561976 IFITM5A6NNB3 132 aa12.86□□□□□ -0.35
VPS9D1-202ENST00000561976 PSMD9O00233 223 aa12.86□□□□□ -0.35
VPS9D1-202ENST00000561976 PDCD5O14737 125 aa12.86□□□□□ -0.35
VPS9D1-202ENST00000561976 CREBL2O60519 120 aaPredicted RBP12.86□□□□□ -0.35
VPS9D1-202ENST00000561976 LDB3O75112 727 aa12.86□□□□□ -0.35
VPS9D1-202ENST00000561976 HOXD4P09016 255 aaPredicted RBP12.86□□□□□ -0.35
VPS9D1-202ENST00000561976 RPS4Y1P22090 263 aaKnown RBP12.86□□□□□ -0.35
VPS9D1-202ENST00000561976 NFYAP23511 347 aaPredicted RBP12.86□□□□□ -0.35
VPS9D1-202ENST00000561976 MAGEB1P43366 347 aa12.86□□□□□ -0.35
VPS9D1-202ENST00000561976 NHLRC3Q5JS37 347 aa12.86□□□□□ -0.35
VPS9D1-202ENST00000561976 TMEM69Q5SWH9 247 aa12.86□□□□□ -0.35
VPS9D1-202ENST00000561976 COQ8AQ8NI60 647 aa12.86□□□□□ -0.35
VPS9D1-202ENST00000561976 LCN9Q8WX39 176 aa12.86□□□□□ -0.35
VPS9D1-202ENST00000561976 CNOT9Q92600 299 aaKnown RBP12.86□□□□□ -0.35
VPS9D1-202ENST00000561976 S100A16Q96FQ6 103 aaKnown RBP12.86□□□□□ -0.35
VPS9D1-202ENST00000561976 HHIPL1Q96JK4 782 aa12.86□□□□□ -0.35
VPS9D1-202ENST00000561976 ZNF559Q9BR84 538 aa12.86□□□□□ -0.35
VPS9D1-202ENST00000561976 LIN7BQ9HAP6 207 aa12.86□□□□□ -0.35
VPS9D1-202ENST00000561976 PLEKHA1Q9HB21 404 aa12.86□□□□□ -0.35
VPS9D1-202ENST00000561976 IL21RQ9HBE5 538 aa12.86□□□□□ -0.35
VPS9D1-202ENST00000561976 MCCC2Q9HCC0 563 aa12.86□□□□□ -0.35
VPS9D1-202ENST00000561976 GPN1Q9HCN4 374 aaPredicted RBP12.86□□□□□ -0.35
VPS9D1-202ENST00000561976 ZC4H2Q9NQZ6 224 aa12.86□□□□□ -0.35
VPS9D1-202ENST00000561976 C19orf53Q9UNZ5 99 aaPredicted RBP12.86□□□□□ -0.35
VPS9D1-202ENST00000561976 IER3IP1Q9Y5U9 82 aa12.86□□□□□ -0.35
VPS9D1-202ENST00000561976 POM121CA8CG34 1229 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 FMO6PO60774 539 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 GABRA3P34903 492 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 NUP62P37198 522 aaPredicted RBP12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 RUNX2Q13950 521 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 EXOSC7Q15024 291 aaKnown RBP12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 PON3Q15166 354 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 LINC00303Q3SY05 128 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 ELFN2Q5R3F8 820 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 OR5M10Q6IEU7 315 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 ZNF613Q6PF04 617 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 SEZ6L2Q6UXD5 910 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 TMEFF1Q8IYR6 380 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 OR6K6Q8NGW6 343 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 SYNPRQ8TBG9 265 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 SLC25A38Q96DW6 304 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 CMTM3Q96MX0 182 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 C14orf105Q9NVL8 296 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 PIPOXQ9P0Z9 390 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 A0A1B0GWA3 101 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 PLSCR5A0PG75 271 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 AIPO00170 330 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 B3GALT2O43825 422 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 GIPP09681 153 aaPredicted RBP12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 IFNGR1P15260 489 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 ZP3P21754 424 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 RPL4P36578 427 aaKnown RBP12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 RAP2BP61225 183 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 RPS15AP62244 130 aaKnown RBP12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 RIPPLY1Q0D2K3 151 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 GAS6Q14393 721 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 CDRT4Q8N9R6 151 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 POMGNT2Q8NAT1 580 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 ZBTB44Q8NCP5 570 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 LHFPL5Q8TAF8 219 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 CXorf58Q96LI9 332 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 CD93Q9NPY3 652 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 NCDNQ9UBB6 729 aa12.85□□□□□ -0.35
VPS9D1-202ENST00000561976 GXYLT2A0PJZ3 443 aa12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 IDSB3KWA1 339 aa12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 PIN1P1O15428 100 aa12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 ZNF749O43361 778 aa12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 SELENOFO60613 162 aa12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 POU3F2P20265 443 aaPredicted RBP12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 GRPRP30550 384 aa12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 DCTDP32321 178 aa12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 LGALS3BPQ08380 585 aa12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 BAMBIQ13145 260 aa12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 ALG10BQ5I7T1 473 aa12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 SFRP5Q5T4F7 317 aa12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 AGBL4Q5VU57 503 aa12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 TMEM81Q6P7N7 255 aa12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 ALKAL2Q6UX46 152 aa12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 KIAA1324Q6UXG2 1013 aaKnown RBP12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 USP53Q70EK8 1073 aa12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 PAQR7Q86WK9 346 aa12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 SPICQ8N5J4 248 aa12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 WDR89Q96FK6 387 aaPredicted RBP12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 LCORQ96JN0 433 aaPredicted RBP12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 HSPA12BQ96MM6 686 aa12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 SERINC2Q96SA4 455 aa12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 GFI1Q99684 422 aa12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 MFRPQ9BY79 579 aa12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 TMEM74BQ9NUR3 256 aa12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 FLRT3Q9NZU0 649 aa12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 COPS3Q9UNS2 423 aa12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 V9GY05 133 aa12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 A0A0B4J2E0 115 aa12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 A0A1B0GX12 115 aa12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 BET1O15155 118 aa12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 CEACAM5P06731 702 aa12.84□□□□□ -0.35
VPS9D1-202ENST00000561976 CTRB1P17538 263 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms